Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2522

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2521 and EX28DRAFT_2522 are separated by 30 nucleotidesEX28DRAFT_2522 and EX28DRAFT_2523 are separated by 112 nucleotides EX28DRAFT_2521: EX28DRAFT_2521 - ABC-type multidrug transport system, ATPase and permease components, at 2,551,478 to 2,553,250 _2521 EX28DRAFT_2522: EX28DRAFT_2522 - Transcriptional regulators, at 2,553,281 to 2,553,739 _2522 EX28DRAFT_2523: EX28DRAFT_2523 - Cysteine synthase, at 2,553,852 to 2,554,901 _2523 Position (kb) 2553 2554Strain fitness (log2 ratio) -2 -1 0 1at 2552.403 kb on + strand, within EX28DRAFT_2521at 2552.403 kb on + strand, within EX28DRAFT_2521at 2552.434 kb on + strand, within EX28DRAFT_2521at 2552.435 kb on - strand, within EX28DRAFT_2521at 2552.482 kb on + strand, within EX28DRAFT_2521at 2552.482 kb on + strand, within EX28DRAFT_2521at 2552.483 kb on - strand, within EX28DRAFT_2521at 2552.483 kb on - strand, within EX28DRAFT_2521at 2552.483 kb on - strand, within EX28DRAFT_2521at 2552.483 kb on - strand, within EX28DRAFT_2521at 2552.505 kb on + strand, within EX28DRAFT_2521at 2552.505 kb on + strand, within EX28DRAFT_2521at 2552.505 kb on + strand, within EX28DRAFT_2521at 2552.506 kb on - strand, within EX28DRAFT_2521at 2553.028 kb on - strand, within EX28DRAFT_2521at 2553.028 kb on - strand, within EX28DRAFT_2521at 2553.099 kb on + strandat 2553.100 kb on - strandat 2553.100 kb on - strandat 2553.100 kb on - strandat 2553.129 kb on + strandat 2553.172 kb on + strandat 2553.172 kb on + strandat 2553.173 kb on - strandat 2553.175 kb on + strandat 2553.175 kb on + strandat 2553.186 kb on - strandat 2553.230 kb on + strandat 2553.230 kb on + strandat 2553.230 kb on + strandat 2553.230 kb on + strandat 2553.231 kb on - strandat 2553.231 kb on - strandat 2553.289 kb on + strandat 2553.293 kb on + strandat 2553.433 kb on - strand, within EX28DRAFT_2522at 2553.433 kb on - strand, within EX28DRAFT_2522at 2553.531 kb on - strand, within EX28DRAFT_2522at 2553.575 kb on + strand, within EX28DRAFT_2522at 2553.575 kb on + strand, within EX28DRAFT_2522at 2553.576 kb on - strand, within EX28DRAFT_2522at 2553.689 kb on - strand, within EX28DRAFT_2522at 2553.777 kb on - strandat 2553.825 kb on + strandat 2553.859 kb on + strandat 2553.860 kb on + strandat 2553.903 kb on + strandat 2553.970 kb on - strand, within EX28DRAFT_2523at 2553.970 kb on - strand, within EX28DRAFT_2523at 2554.050 kb on - strand, within EX28DRAFT_2523at 2554.081 kb on + strand, within EX28DRAFT_2523at 2554.081 kb on + strand, within EX28DRAFT_2523at 2554.082 kb on - strand, within EX28DRAFT_2523at 2554.082 kb on - strand, within EX28DRAFT_2523at 2554.082 kb on - strand, within EX28DRAFT_2523at 2554.119 kb on + strand, within EX28DRAFT_2523at 2554.246 kb on - strand, within EX28DRAFT_2523at 2554.287 kb on + strand, within EX28DRAFT_2523at 2554.287 kb on + strand, within EX28DRAFT_2523at 2554.289 kb on + strand, within EX28DRAFT_2523at 2554.289 kb on + strand, within EX28DRAFT_2523at 2554.290 kb on - strand, within EX28DRAFT_2523at 2554.337 kb on + strand, within EX28DRAFT_2523at 2554.356 kb on - strand, within EX28DRAFT_2523at 2554.398 kb on + strand, within EX28DRAFT_2523at 2554.399 kb on - strand, within EX28DRAFT_2523at 2554.399 kb on - strand, within EX28DRAFT_2523at 2554.399 kb on - strand, within EX28DRAFT_2523at 2554.449 kb on + strand, within EX28DRAFT_2523at 2554.449 kb on + strand, within EX28DRAFT_2523at 2554.449 kb on + strand, within EX28DRAFT_2523at 2554.449 kb on + strand, within EX28DRAFT_2523at 2554.696 kb on + strand, within EX28DRAFT_2523at 2554.697 kb on - strand, within EX28DRAFT_2523at 2554.718 kb on + strand, within EX28DRAFT_2523at 2554.719 kb on - strand, within EX28DRAFT_2523at 2554.719 kb on - strand, within EX28DRAFT_2523at 2554.719 kb on - strand, within EX28DRAFT_2523

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,552,403 + EX28DRAFT_2521 0.52 -0.5
2,552,403 + EX28DRAFT_2521 0.52 -0.0
2,552,434 + EX28DRAFT_2521 0.54 +0.1
2,552,435 - EX28DRAFT_2521 0.54 +0.6
2,552,482 + EX28DRAFT_2521 0.57 -0.2
2,552,482 + EX28DRAFT_2521 0.57 +0.6
2,552,483 - EX28DRAFT_2521 0.57 -0.2
2,552,483 - EX28DRAFT_2521 0.57 +0.1
2,552,483 - EX28DRAFT_2521 0.57 +0.2
2,552,483 - EX28DRAFT_2521 0.57 -0.5
2,552,505 + EX28DRAFT_2521 0.58 +0.0
2,552,505 + EX28DRAFT_2521 0.58 -0.2
2,552,505 + EX28DRAFT_2521 0.58 +0.5
2,552,506 - EX28DRAFT_2521 0.58 +0.1
2,553,028 - EX28DRAFT_2521 0.87 -0.0
2,553,028 - EX28DRAFT_2521 0.87 -0.3
2,553,099 + -0.7
2,553,100 - -0.6
2,553,100 - -0.2
2,553,100 - -0.0
2,553,129 + -0.1
2,553,172 + -0.1
2,553,172 + -0.4
2,553,173 - -0.1
2,553,175 + +0.1
2,553,175 + +0.4
2,553,186 - +0.7
2,553,230 + -0.5
2,553,230 + -1.9
2,553,230 + -0.4
2,553,230 + -0.4
2,553,231 - +0.4
2,553,231 - -1.6
2,553,289 + -1.2
2,553,293 + -0.1
2,553,433 - EX28DRAFT_2522 0.33 -0.6
2,553,433 - EX28DRAFT_2522 0.33 +0.5
2,553,531 - EX28DRAFT_2522 0.54 -0.5
2,553,575 + EX28DRAFT_2522 0.64 -0.5
2,553,575 + EX28DRAFT_2522 0.64 -0.5
2,553,576 - EX28DRAFT_2522 0.64 -0.2
2,553,689 - EX28DRAFT_2522 0.89 -0.0
2,553,777 - +1.0
2,553,825 + -2.5
2,553,859 + -0.2
2,553,860 + +0.5
2,553,903 + +0.2
2,553,970 - EX28DRAFT_2523 0.11 -0.1
2,553,970 - EX28DRAFT_2523 0.11 +1.1
2,554,050 - EX28DRAFT_2523 0.19 -0.6
2,554,081 + EX28DRAFT_2523 0.22 -0.1
2,554,081 + EX28DRAFT_2523 0.22 -1.2
2,554,082 - EX28DRAFT_2523 0.22 +0.4
2,554,082 - EX28DRAFT_2523 0.22 +0.6
2,554,082 - EX28DRAFT_2523 0.22 +0.1
2,554,119 + EX28DRAFT_2523 0.25 +0.3
2,554,246 - EX28DRAFT_2523 0.38 +0.4
2,554,287 + EX28DRAFT_2523 0.41 +0.2
2,554,287 + EX28DRAFT_2523 0.41 +0.0
2,554,289 + EX28DRAFT_2523 0.42 +0.3
2,554,289 + EX28DRAFT_2523 0.42 -0.0
2,554,290 - EX28DRAFT_2523 0.42 -0.4
2,554,337 + EX28DRAFT_2523 0.46 +0.5
2,554,356 - EX28DRAFT_2523 0.48 +0.0
2,554,398 + EX28DRAFT_2523 0.52 +0.0
2,554,399 - EX28DRAFT_2523 0.52 +0.3
2,554,399 - EX28DRAFT_2523 0.52 -0.1
2,554,399 - EX28DRAFT_2523 0.52 +0.2
2,554,449 + EX28DRAFT_2523 0.57 -0.4
2,554,449 + EX28DRAFT_2523 0.57 +0.1
2,554,449 + EX28DRAFT_2523 0.57 +0.8
2,554,449 + EX28DRAFT_2523 0.57 +0.3
2,554,696 + EX28DRAFT_2523 0.80 -0.3
2,554,697 - EX28DRAFT_2523 0.80 -0.7
2,554,718 + EX28DRAFT_2523 0.82 -0.5
2,554,719 - EX28DRAFT_2523 0.83 +0.3
2,554,719 - EX28DRAFT_2523 0.83 +0.0
2,554,719 - EX28DRAFT_2523 0.83 +0.4

Or see this region's nucleotide sequence