Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2517

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2515 and EX28DRAFT_2516 are separated by 33 nucleotidesEX28DRAFT_2516 and EX28DRAFT_2517 are separated by 200 nucleotidesEX28DRAFT_2517 and EX28DRAFT_2518 are separated by 95 nucleotides EX28DRAFT_2515: EX28DRAFT_2515 - O-6-methylguanine DNA methyltransferase, at 2,545,790 to 2,546,101 _2515 EX28DRAFT_2516: EX28DRAFT_2516 - Uncharacterized protein conserved in bacteria, at 2,546,135 to 2,546,662 _2516 EX28DRAFT_2517: EX28DRAFT_2517 - acyl-CoA thioesterase II, at 2,546,863 to 2,547,723 _2517 EX28DRAFT_2518: EX28DRAFT_2518 - ammonium transporter, at 2,547,819 to 2,549,108 _2518 Position (kb) 2546 2547 2548Strain fitness (log2 ratio) -2 -1 0 1at 2545.866 kb on - strand, within EX28DRAFT_2515at 2545.866 kb on - strand, within EX28DRAFT_2515at 2545.946 kb on - strand, within EX28DRAFT_2515at 2546.095 kb on - strandat 2546.095 kb on - strandat 2546.096 kb on + strandat 2546.096 kb on + strandat 2546.097 kb on - strandat 2546.321 kb on - strand, within EX28DRAFT_2516at 2546.352 kb on + strand, within EX28DRAFT_2516at 2546.353 kb on - strand, within EX28DRAFT_2516at 2546.353 kb on - strand, within EX28DRAFT_2516at 2546.360 kb on + strand, within EX28DRAFT_2516at 2546.457 kb on - strand, within EX28DRAFT_2516at 2546.552 kb on - strand, within EX28DRAFT_2516at 2546.633 kb on + strandat 2546.633 kb on + strandat 2546.634 kb on - strandat 2546.634 kb on - strandat 2546.634 kb on - strandat 2546.642 kb on + strandat 2546.642 kb on + strandat 2546.643 kb on - strandat 2546.643 kb on - strandat 2546.643 kb on - strandat 2546.723 kb on + strandat 2546.723 kb on + strandat 2546.723 kb on + strandat 2546.724 kb on - strandat 2546.821 kb on + strandat 2546.822 kb on - strandat 2546.822 kb on - strandat 2546.822 kb on - strandat 2546.822 kb on - strandat 2546.831 kb on - strandat 2546.831 kb on - strandat 2546.831 kb on - strandat 2546.862 kb on + strandat 2546.862 kb on + strandat 2546.862 kb on + strandat 2546.862 kb on + strandat 2546.862 kb on + strandat 2546.862 kb on + strandat 2546.862 kb on + strandat 2546.863 kb on + strandat 2546.863 kb on - strandat 2546.863 kb on - strandat 2546.863 kb on - strandat 2546.863 kb on - strandat 2546.863 kb on - strandat 2546.898 kb on - strandat 2546.954 kb on + strand, within EX28DRAFT_2517at 2546.995 kb on + strand, within EX28DRAFT_2517at 2546.996 kb on - strand, within EX28DRAFT_2517at 2546.996 kb on - strand, within EX28DRAFT_2517at 2547.049 kb on + strand, within EX28DRAFT_2517at 2547.049 kb on + strand, within EX28DRAFT_2517at 2547.049 kb on + strand, within EX28DRAFT_2517at 2547.050 kb on - strand, within EX28DRAFT_2517at 2547.050 kb on - strand, within EX28DRAFT_2517at 2547.088 kb on + strand, within EX28DRAFT_2517at 2547.169 kb on + strand, within EX28DRAFT_2517at 2547.169 kb on + strand, within EX28DRAFT_2517at 2547.170 kb on - strand, within EX28DRAFT_2517at 2547.170 kb on - strand, within EX28DRAFT_2517at 2547.251 kb on + strand, within EX28DRAFT_2517at 2547.252 kb on - strand, within EX28DRAFT_2517at 2547.452 kb on - strand, within EX28DRAFT_2517at 2547.602 kb on - strand, within EX28DRAFT_2517at 2547.602 kb on - strand, within EX28DRAFT_2517at 2547.616 kb on - strand, within EX28DRAFT_2517at 2547.658 kb on + strandat 2547.660 kb on + strandat 2547.783 kb on + strandat 2547.783 kb on + strandat 2547.829 kb on + strandat 2547.829 kb on + strandat 2547.830 kb on - strandat 2547.830 kb on - strandat 2547.917 kb on + strandat 2547.917 kb on + strandat 2547.918 kb on - strandat 2547.965 kb on + strand, within EX28DRAFT_2518at 2547.965 kb on + strand, within EX28DRAFT_2518at 2547.965 kb on + strand, within EX28DRAFT_2518at 2547.965 kb on + strand, within EX28DRAFT_2518at 2547.966 kb on - strand, within EX28DRAFT_2518at 2548.049 kb on + strand, within EX28DRAFT_2518at 2548.415 kb on - strand, within EX28DRAFT_2518at 2548.539 kb on + strand, within EX28DRAFT_2518at 2548.539 kb on + strand, within EX28DRAFT_2518at 2548.621 kb on + strand, within EX28DRAFT_2518at 2548.621 kb on + strand, within EX28DRAFT_2518at 2548.674 kb on - strand, within EX28DRAFT_2518at 2548.712 kb on + strand, within EX28DRAFT_2518

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,545,866 - EX28DRAFT_2515 0.24 -0.5
2,545,866 - EX28DRAFT_2515 0.24 +0.0
2,545,946 - EX28DRAFT_2515 0.50 -0.2
2,546,095 - -0.7
2,546,095 - -0.6
2,546,096 + +1.3
2,546,096 + -0.2
2,546,097 - +0.2
2,546,321 - EX28DRAFT_2516 0.35 -0.3
2,546,352 + EX28DRAFT_2516 0.41 -0.0
2,546,353 - EX28DRAFT_2516 0.41 +1.0
2,546,353 - EX28DRAFT_2516 0.41 +0.7
2,546,360 + EX28DRAFT_2516 0.43 +0.3
2,546,457 - EX28DRAFT_2516 0.61 +1.4
2,546,552 - EX28DRAFT_2516 0.79 +0.3
2,546,633 + -0.3
2,546,633 + -0.1
2,546,634 - -0.8
2,546,634 - +0.5
2,546,634 - -0.6
2,546,642 + +0.6
2,546,642 + +0.2
2,546,643 - +0.6
2,546,643 - +0.9
2,546,643 - -0.8
2,546,723 + +0.1
2,546,723 + +0.6
2,546,723 + +0.1
2,546,724 - -0.2
2,546,821 + +1.0
2,546,822 - -0.0
2,546,822 - -0.4
2,546,822 - +0.4
2,546,822 - +0.1
2,546,831 - -0.3
2,546,831 - +0.7
2,546,831 - -0.9
2,546,862 + -0.4
2,546,862 + +0.1
2,546,862 + -0.1
2,546,862 + -0.4
2,546,862 + -0.6
2,546,862 + -0.1
2,546,862 + -0.7
2,546,863 + -0.4
2,546,863 - -0.1
2,546,863 - +0.2
2,546,863 - -0.1
2,546,863 - -0.3
2,546,863 - -0.1
2,546,898 - -0.8
2,546,954 + EX28DRAFT_2517 0.11 -0.1
2,546,995 + EX28DRAFT_2517 0.15 -0.1
2,546,996 - EX28DRAFT_2517 0.15 -0.4
2,546,996 - EX28DRAFT_2517 0.15 -0.0
2,547,049 + EX28DRAFT_2517 0.22 -0.4
2,547,049 + EX28DRAFT_2517 0.22 -0.5
2,547,049 + EX28DRAFT_2517 0.22 -1.1
2,547,050 - EX28DRAFT_2517 0.22 +0.4
2,547,050 - EX28DRAFT_2517 0.22 -0.6
2,547,088 + EX28DRAFT_2517 0.26 +0.3
2,547,169 + EX28DRAFT_2517 0.36 -0.9
2,547,169 + EX28DRAFT_2517 0.36 -0.1
2,547,170 - EX28DRAFT_2517 0.36 +0.1
2,547,170 - EX28DRAFT_2517 0.36 -0.7
2,547,251 + EX28DRAFT_2517 0.45 -0.4
2,547,252 - EX28DRAFT_2517 0.45 -1.0
2,547,452 - EX28DRAFT_2517 0.68 -1.2
2,547,602 - EX28DRAFT_2517 0.86 -0.7
2,547,602 - EX28DRAFT_2517 0.86 -0.3
2,547,616 - EX28DRAFT_2517 0.87 +0.1
2,547,658 + -0.3
2,547,660 + +0.5
2,547,783 + +0.3
2,547,783 + +0.1
2,547,829 + +0.4
2,547,829 + -0.2
2,547,830 - +0.6
2,547,830 - +0.1
2,547,917 + -2.1
2,547,917 + -0.2
2,547,918 - -0.2
2,547,965 + EX28DRAFT_2518 0.11 -0.3
2,547,965 + EX28DRAFT_2518 0.11 +0.4
2,547,965 + EX28DRAFT_2518 0.11 -1.0
2,547,965 + EX28DRAFT_2518 0.11 +0.2
2,547,966 - EX28DRAFT_2518 0.11 +0.4
2,548,049 + EX28DRAFT_2518 0.18 +0.9
2,548,415 - EX28DRAFT_2518 0.46 -2.2
2,548,539 + EX28DRAFT_2518 0.56 -0.6
2,548,539 + EX28DRAFT_2518 0.56 -0.9
2,548,621 + EX28DRAFT_2518 0.62 -0.6
2,548,621 + EX28DRAFT_2518 0.62 -0.1
2,548,674 - EX28DRAFT_2518 0.66 +0.3
2,548,712 + EX28DRAFT_2518 0.69 -0.8

Or see this region's nucleotide sequence