Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2468

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2466 and EX28DRAFT_2467 are separated by 58 nucleotidesEX28DRAFT_2467 and EX28DRAFT_2468 are separated by 52 nucleotidesEX28DRAFT_2468 and EX28DRAFT_2469 overlap by 8 nucleotidesEX28DRAFT_2469 and EX28DRAFT_2470 are separated by 143 nucleotides EX28DRAFT_2466: EX28DRAFT_2466 - Short-chain dehydrogenases of various substrate specificities, at 2,496,027 to 2,496,797 _2466 EX28DRAFT_2467: EX28DRAFT_2467 - Thioredoxin domain-containing protein, at 2,496,856 to 2,497,710 _2467 EX28DRAFT_2468: EX28DRAFT_2468 - TIGR00245 family protein, at 2,497,763 to 2,498,545 _2468 EX28DRAFT_2469: EX28DRAFT_2469 - ABC-type uncharacterized transport system, ATPase component, at 2,498,538 to 2,499,209 _2469 EX28DRAFT_2470: EX28DRAFT_2470 - hypothetical protein, at 2,499,353 to 2,500,204 _2470 Position (kb) 2497 2498 2499Strain fitness (log2 ratio) -2 -1 0 1 2at 2496.825 kb on + strandat 2496.825 kb on + strandat 2496.826 kb on - strandat 2496.826 kb on - strandat 2496.826 kb on - strandat 2496.826 kb on - strandat 2496.880 kb on - strandat 2496.940 kb on + strandat 2497.010 kb on - strand, within EX28DRAFT_2467at 2497.092 kb on + strand, within EX28DRAFT_2467at 2497.099 kb on + strand, within EX28DRAFT_2467at 2497.099 kb on + strand, within EX28DRAFT_2467at 2497.240 kb on - strand, within EX28DRAFT_2467at 2497.243 kb on + strand, within EX28DRAFT_2467at 2497.706 kb on - strandat 2497.812 kb on + strandat 2497.877 kb on - strand, within EX28DRAFT_2468at 2497.877 kb on - strand, within EX28DRAFT_2468at 2497.897 kb on - strand, within EX28DRAFT_2468at 2497.900 kb on + strand, within EX28DRAFT_2468at 2497.988 kb on + strand, within EX28DRAFT_2468at 2498.067 kb on - strand, within EX28DRAFT_2468at 2498.121 kb on + strand, within EX28DRAFT_2468at 2498.122 kb on - strand, within EX28DRAFT_2468at 2498.278 kb on + strand, within EX28DRAFT_2468at 2498.286 kb on + strand, within EX28DRAFT_2468at 2498.329 kb on + strand, within EX28DRAFT_2468at 2498.329 kb on + strand, within EX28DRAFT_2468at 2498.377 kb on + strand, within EX28DRAFT_2468at 2498.379 kb on + strand, within EX28DRAFT_2468at 2498.391 kb on + strand, within EX28DRAFT_2468at 2498.392 kb on - strand, within EX28DRAFT_2468at 2498.435 kb on + strand, within EX28DRAFT_2468at 2498.436 kb on - strand, within EX28DRAFT_2468at 2498.441 kb on - strand, within EX28DRAFT_2468at 2498.527 kb on + strandat 2498.527 kb on + strandat 2498.534 kb on - strandat 2498.586 kb on - strandat 2498.586 kb on - strandat 2498.608 kb on - strand, within EX28DRAFT_2469at 2498.608 kb on - strand, within EX28DRAFT_2469at 2498.645 kb on + strand, within EX28DRAFT_2469at 2498.882 kb on + strand, within EX28DRAFT_2469at 2498.957 kb on - strand, within EX28DRAFT_2469at 2499.074 kb on + strand, within EX28DRAFT_2469at 2499.100 kb on - strand, within EX28DRAFT_2469at 2499.187 kb on - strandat 2499.187 kb on - strandat 2499.187 kb on - strandat 2499.189 kb on + strandat 2499.190 kb on - strandat 2499.211 kb on - strandat 2499.235 kb on - strandat 2499.237 kb on + strandat 2499.252 kb on + strandat 2499.337 kb on - strandat 2499.345 kb on + strandat 2499.346 kb on - strandat 2499.361 kb on + strandat 2499.361 kb on + strandat 2499.361 kb on + strandat 2499.362 kb on - strandat 2499.415 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,496,825 + -0.5
2,496,825 + -0.5
2,496,826 - +0.4
2,496,826 - +0.0
2,496,826 - -0.9
2,496,826 - -0.4
2,496,880 - +0.3
2,496,940 + +0.0
2,497,010 - EX28DRAFT_2467 0.18 -0.5
2,497,092 + EX28DRAFT_2467 0.28 +0.5
2,497,099 + EX28DRAFT_2467 0.28 +2.3
2,497,099 + EX28DRAFT_2467 0.28 +0.9
2,497,240 - EX28DRAFT_2467 0.45 -0.2
2,497,243 + EX28DRAFT_2467 0.45 +0.6
2,497,706 - +0.9
2,497,812 + -0.6
2,497,877 - EX28DRAFT_2468 0.15 -0.9
2,497,877 - EX28DRAFT_2468 0.15 +0.0
2,497,897 - EX28DRAFT_2468 0.17 +0.2
2,497,900 + EX28DRAFT_2468 0.17 -0.1
2,497,988 + EX28DRAFT_2468 0.29 -0.1
2,498,067 - EX28DRAFT_2468 0.39 -0.5
2,498,121 + EX28DRAFT_2468 0.46 +0.3
2,498,122 - EX28DRAFT_2468 0.46 -0.4
2,498,278 + EX28DRAFT_2468 0.66 -0.4
2,498,286 + EX28DRAFT_2468 0.67 -0.2
2,498,329 + EX28DRAFT_2468 0.72 -0.3
2,498,329 + EX28DRAFT_2468 0.72 -1.8
2,498,377 + EX28DRAFT_2468 0.78 -1.1
2,498,379 + EX28DRAFT_2468 0.79 -0.9
2,498,391 + EX28DRAFT_2468 0.80 +0.1
2,498,392 - EX28DRAFT_2468 0.80 +0.6
2,498,435 + EX28DRAFT_2468 0.86 +0.4
2,498,436 - EX28DRAFT_2468 0.86 -0.1
2,498,441 - EX28DRAFT_2468 0.87 -0.6
2,498,527 + -0.2
2,498,527 + -0.1
2,498,534 - -0.1
2,498,586 - -0.5
2,498,586 - -0.7
2,498,608 - EX28DRAFT_2469 0.10 +0.9
2,498,608 - EX28DRAFT_2469 0.10 -1.3
2,498,645 + EX28DRAFT_2469 0.16 -0.7
2,498,882 + EX28DRAFT_2469 0.51 +0.1
2,498,957 - EX28DRAFT_2469 0.62 +0.2
2,499,074 + EX28DRAFT_2469 0.80 -0.2
2,499,100 - EX28DRAFT_2469 0.84 -1.1
2,499,187 - +0.2
2,499,187 - +0.4
2,499,187 - -0.6
2,499,189 + -0.6
2,499,190 - -0.5
2,499,211 - +0.5
2,499,235 - +0.2
2,499,237 + +0.0
2,499,252 + -2.7
2,499,337 - +0.4
2,499,345 + -0.5
2,499,346 - +0.2
2,499,361 + +0.3
2,499,361 + -0.1
2,499,361 + -0.2
2,499,362 - -0.1
2,499,415 - -0.2

Or see this region's nucleotide sequence