Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2349

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2347 and EX28DRAFT_2348 are separated by 180 nucleotidesEX28DRAFT_2348 and EX28DRAFT_2349 are separated by 60 nucleotidesEX28DRAFT_2349 and EX28DRAFT_2350 are separated by 128 nucleotides EX28DRAFT_2347: EX28DRAFT_2347 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 2,368,125 to 2,369,363 _2347 EX28DRAFT_2348: EX28DRAFT_2348 - Universal stress protein UspA and related nucleotide-binding proteins, at 2,369,544 to 2,369,972 _2348 EX28DRAFT_2349: EX28DRAFT_2349 - alkyl hydroperoxide reductase subunit F, at 2,370,033 to 2,371,598 _2349 EX28DRAFT_2350: EX28DRAFT_2350 - peroxiredoxin, at 2,371,727 to 2,372,290 _2350 Position (kb) 2370 2371 2372Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2369.351 kb on + strandat 2369.351 kb on + strandat 2369.351 kb on + strandat 2369.351 kb on + strandat 2369.351 kb on + strandat 2369.351 kb on + strandat 2369.351 kb on + strandat 2369.352 kb on - strandat 2369.352 kb on - strandat 2369.352 kb on - strandat 2369.352 kb on - strandat 2369.386 kb on + strandat 2369.392 kb on + strandat 2369.392 kb on + strandat 2369.392 kb on + strandat 2369.392 kb on + strandat 2369.392 kb on + strandat 2369.392 kb on + strandat 2369.392 kb on + strandat 2369.393 kb on - strandat 2369.393 kb on - strandat 2369.393 kb on - strandat 2369.393 kb on - strandat 2369.393 kb on - strandat 2369.395 kb on - strandat 2369.400 kb on + strandat 2369.400 kb on + strandat 2369.401 kb on - strandat 2369.404 kb on + strandat 2369.446 kb on + strandat 2369.459 kb on + strandat 2369.496 kb on - strandat 2369.525 kb on + strandat 2369.525 kb on + strandat 2369.543 kb on + strandat 2369.547 kb on + strandat 2369.547 kb on + strandat 2369.548 kb on - strandat 2369.821 kb on + strand, within EX28DRAFT_2348at 2369.966 kb on - strandat 2369.966 kb on - strandat 2370.004 kb on + strandat 2370.021 kb on + strandat 2370.031 kb on + strandat 2370.032 kb on - strandat 2370.059 kb on - strandat 2370.151 kb on - strandat 2370.206 kb on + strand, within EX28DRAFT_2349at 2370.206 kb on + strand, within EX28DRAFT_2349at 2370.236 kb on + strand, within EX28DRAFT_2349at 2370.237 kb on - strand, within EX28DRAFT_2349at 2370.237 kb on - strand, within EX28DRAFT_2349at 2370.568 kb on + strand, within EX28DRAFT_2349at 2371.075 kb on + strand, within EX28DRAFT_2349at 2371.075 kb on + strand, within EX28DRAFT_2349at 2371.076 kb on - strand, within EX28DRAFT_2349at 2371.225 kb on + strand, within EX28DRAFT_2349at 2371.228 kb on + strand, within EX28DRAFT_2349at 2371.228 kb on + strand, within EX28DRAFT_2349at 2371.228 kb on + strand, within EX28DRAFT_2349at 2371.415 kb on + strand, within EX28DRAFT_2349at 2371.561 kb on + strandat 2371.583 kb on + strandat 2371.584 kb on - strandat 2371.584 kb on - strandat 2371.586 kb on + strandat 2371.587 kb on - strandat 2371.642 kb on - strandat 2371.642 kb on - strandat 2371.642 kb on - strandat 2371.681 kb on + strandat 2371.682 kb on - strandat 2371.749 kb on - strandat 2371.749 kb on - strandat 2371.749 kb on - strandat 2371.796 kb on + strand, within EX28DRAFT_2350at 2371.796 kb on + strand, within EX28DRAFT_2350at 2371.821 kb on + strand, within EX28DRAFT_2350at 2371.840 kb on + strand, within EX28DRAFT_2350at 2371.871 kb on - strand, within EX28DRAFT_2350at 2372.011 kb on - strand, within EX28DRAFT_2350at 2372.119 kb on - strand, within EX28DRAFT_2350at 2372.119 kb on - strand, within EX28DRAFT_2350at 2372.161 kb on + strand, within EX28DRAFT_2350at 2372.162 kb on - strand, within EX28DRAFT_2350at 2372.295 kb on - strandat 2372.295 kb on - strandat 2372.321 kb on + strandat 2372.321 kb on + strandat 2372.322 kb on - strandat 2372.322 kb on - strandat 2372.322 kb on - strandat 2372.322 kb on - strandat 2372.356 kb on + strandat 2372.486 kb on + strandat 2372.487 kb on - strandat 2372.526 kb on + strandat 2372.527 kb on - strandat 2372.536 kb on + strandat 2372.538 kb on + strandat 2372.538 kb on + strandat 2372.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,369,351 + +0.2
2,369,351 + +0.3
2,369,351 + +0.0
2,369,351 + -1.0
2,369,351 + +1.1
2,369,351 + +0.0
2,369,351 + -0.2
2,369,352 - +0.4
2,369,352 - -0.4
2,369,352 - +0.2
2,369,352 - -0.8
2,369,386 + +0.4
2,369,392 + +0.2
2,369,392 + +0.3
2,369,392 + +0.6
2,369,392 + +0.2
2,369,392 + +1.0
2,369,392 + +0.2
2,369,392 + +0.3
2,369,393 - +0.1
2,369,393 - +0.2
2,369,393 - +0.1
2,369,393 - -0.0
2,369,393 - -1.9
2,369,395 - -0.2
2,369,400 + -0.6
2,369,400 + +0.4
2,369,401 - -0.5
2,369,404 + +0.0
2,369,446 + -1.7
2,369,459 + +0.3
2,369,496 - -0.3
2,369,525 + -0.5
2,369,525 + +0.0
2,369,543 + -1.1
2,369,547 + -0.2
2,369,547 + +0.2
2,369,548 - -1.3
2,369,821 + EX28DRAFT_2348 0.65 +0.1
2,369,966 - -0.3
2,369,966 - +0.5
2,370,004 + +0.2
2,370,021 + -1.0
2,370,031 + +0.4
2,370,032 - -0.6
2,370,059 - +0.5
2,370,151 - -3.0
2,370,206 + EX28DRAFT_2349 0.11 -0.5
2,370,206 + EX28DRAFT_2349 0.11 -0.3
2,370,236 + EX28DRAFT_2349 0.13 -0.3
2,370,237 - EX28DRAFT_2349 0.13 +0.1
2,370,237 - EX28DRAFT_2349 0.13 +0.0
2,370,568 + EX28DRAFT_2349 0.34 +0.2
2,371,075 + EX28DRAFT_2349 0.67 +0.2
2,371,075 + EX28DRAFT_2349 0.67 -0.7
2,371,076 - EX28DRAFT_2349 0.67 +0.1
2,371,225 + EX28DRAFT_2349 0.76 +0.7
2,371,228 + EX28DRAFT_2349 0.76 +0.6
2,371,228 + EX28DRAFT_2349 0.76 +0.4
2,371,228 + EX28DRAFT_2349 0.76 +1.1
2,371,415 + EX28DRAFT_2349 0.88 +0.8
2,371,561 + -0.9
2,371,583 + +0.7
2,371,584 - +0.1
2,371,584 - -0.3
2,371,586 + -1.2
2,371,587 - -0.3
2,371,642 - +2.8
2,371,642 - +0.3
2,371,642 - -0.9
2,371,681 + -3.2
2,371,682 - +0.3
2,371,749 - +0.0
2,371,749 - -0.1
2,371,749 - +0.0
2,371,796 + EX28DRAFT_2350 0.12 +0.2
2,371,796 + EX28DRAFT_2350 0.12 +1.4
2,371,821 + EX28DRAFT_2350 0.17 -0.0
2,371,840 + EX28DRAFT_2350 0.20 -0.3
2,371,871 - EX28DRAFT_2350 0.26 -0.3
2,372,011 - EX28DRAFT_2350 0.50 +0.3
2,372,119 - EX28DRAFT_2350 0.70 +0.0
2,372,119 - EX28DRAFT_2350 0.70 +0.5
2,372,161 + EX28DRAFT_2350 0.77 -0.6
2,372,162 - EX28DRAFT_2350 0.77 +0.2
2,372,295 - +0.4
2,372,295 - +0.1
2,372,321 + -1.4
2,372,321 + +0.1
2,372,322 - +0.0
2,372,322 - -0.1
2,372,322 - -0.2
2,372,322 - +0.1
2,372,356 + +0.3
2,372,486 + -0.0
2,372,487 - -0.6
2,372,526 + -0.6
2,372,527 - +0.5
2,372,536 + +0.1
2,372,538 + -0.0
2,372,538 + -0.7
2,372,565 - -0.3

Or see this region's nucleotide sequence