Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2166 and EX28DRAFT_2167 overlap by 4 nucleotides EX28DRAFT_2167 and EX28DRAFT_2168 are separated by 101 nucleotides
EX28DRAFT_2166: EX28DRAFT_2166 - drug resistance transporter, EmrB/QacA subfamily, at 2,189,743 to 2,191,314
_2166
EX28DRAFT_2167: EX28DRAFT_2167 - Multidrug resistance efflux pump, at 2,191,311 to 2,192,405
_2167
EX28DRAFT_2168: EX28DRAFT_2168 - Na+/H+ antiporter NhaD and related arsenite permeases, at 2,192,507 to 2,193,616
_2168
Position (kb)
2191
2192
2193 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2190.444 kb on - strand, within EX28DRAFT_2166 at 2190.537 kb on - strand, within EX28DRAFT_2166 at 2190.608 kb on + strand, within EX28DRAFT_2166 at 2190.718 kb on - strand, within EX28DRAFT_2166 at 2191.134 kb on - strand, within EX28DRAFT_2166 at 2191.163 kb on + strand at 2191.163 kb on + strand at 2191.164 kb on - strand at 2191.492 kb on - strand, within EX28DRAFT_2167 at 2191.492 kb on - strand, within EX28DRAFT_2167 at 2191.809 kb on + strand, within EX28DRAFT_2167 at 2191.866 kb on - strand, within EX28DRAFT_2167 at 2192.321 kb on + strand at 2192.348 kb on + strand at 2192.444 kb on - strand at 2192.444 kb on - strand at 2192.444 kb on - strand at 2192.444 kb on - strand at 2192.462 kb on - strand at 2192.472 kb on + strand at 2192.474 kb on + strand at 2192.508 kb on + strand at 2192.508 kb on + strand at 2192.509 kb on - strand at 2192.509 kb on - strand at 2192.509 kb on - strand at 2192.510 kb on + strand at 2192.510 kb on + strand at 2192.510 kb on + strand at 2192.511 kb on - strand at 2192.590 kb on + strand at 2192.701 kb on - strand, within EX28DRAFT_2168 at 2192.701 kb on - strand, within EX28DRAFT_2168 at 2192.726 kb on + strand, within EX28DRAFT_2168 at 2192.849 kb on - strand, within EX28DRAFT_2168 at 2192.955 kb on + strand, within EX28DRAFT_2168 at 2192.955 kb on + strand, within EX28DRAFT_2168 at 2192.956 kb on - strand, within EX28DRAFT_2168 at 2192.988 kb on + strand, within EX28DRAFT_2168 at 2192.989 kb on - strand, within EX28DRAFT_2168 at 2192.989 kb on - strand, within EX28DRAFT_2168 at 2193.051 kb on + strand, within EX28DRAFT_2168 at 2193.051 kb on + strand, within EX28DRAFT_2168 at 2193.140 kb on - strand, within EX28DRAFT_2168 at 2193.206 kb on - strand, within EX28DRAFT_2168 at 2193.364 kb on + strand, within EX28DRAFT_2168 at 2193.365 kb on - strand, within EX28DRAFT_2168
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,190,444 - EX28DRAFT_2166 0.45 -0.0 2,190,537 - EX28DRAFT_2166 0.51 +0.2 2,190,608 + EX28DRAFT_2166 0.55 -2.8 2,190,718 - EX28DRAFT_2166 0.62 -0.1 2,191,134 - EX28DRAFT_2166 0.88 +0.6 2,191,163 + -0.2 2,191,163 + +0.6 2,191,164 - -0.1 2,191,492 - EX28DRAFT_2167 0.17 -0.4 2,191,492 - EX28DRAFT_2167 0.17 +0.2 2,191,809 + EX28DRAFT_2167 0.45 -0.3 2,191,866 - EX28DRAFT_2167 0.51 -0.1 2,192,321 + -1.9 2,192,348 + -1.2 2,192,444 - +0.1 2,192,444 - +0.2 2,192,444 - +0.6 2,192,444 - +0.2 2,192,462 - +1.1 2,192,472 + -0.9 2,192,474 + -0.3 2,192,508 + -0.1 2,192,508 + -0.3 2,192,509 - +0.9 2,192,509 - +0.4 2,192,509 - -1.6 2,192,510 + +0.2 2,192,510 + +0.2 2,192,510 + -0.2 2,192,511 - -0.0 2,192,590 + +0.4 2,192,701 - EX28DRAFT_2168 0.17 -0.3 2,192,701 - EX28DRAFT_2168 0.17 +0.4 2,192,726 + EX28DRAFT_2168 0.20 +4.0 2,192,849 - EX28DRAFT_2168 0.31 -0.0 2,192,955 + EX28DRAFT_2168 0.40 +1.1 2,192,955 + EX28DRAFT_2168 0.40 +1.0 2,192,956 - EX28DRAFT_2168 0.40 +0.2 2,192,988 + EX28DRAFT_2168 0.43 -0.2 2,192,989 - EX28DRAFT_2168 0.43 +0.1 2,192,989 - EX28DRAFT_2168 0.43 -0.2 2,193,051 + EX28DRAFT_2168 0.49 +0.1 2,193,051 + EX28DRAFT_2168 0.49 -1.5 2,193,140 - EX28DRAFT_2168 0.57 +0.8 2,193,206 - EX28DRAFT_2168 0.63 -0.3 2,193,364 + EX28DRAFT_2168 0.77 +0.8 2,193,365 - EX28DRAFT_2168 0.77 -0.2
Or see this region's nucleotide sequence