Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2134 and EX28DRAFT_2135 are separated by 23 nucleotides EX28DRAFT_2135 and EX28DRAFT_2136 are separated by 11 nucleotides
EX28DRAFT_2134: EX28DRAFT_2134 - ABC-type dipeptide transport system, periplasmic component, at 2,152,623 to 2,154,161
_2134
EX28DRAFT_2135: EX28DRAFT_2135 - ATPase components of various ABC-type transport systems, contain duplicated ATPase, at 2,154,185 to 2,156,056
_2135
EX28DRAFT_2136: EX28DRAFT_2136 - Asparaginase, at 2,156,068 to 2,157,012
_2136
Position (kb)
2154
2155
2156
2157 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2153.245 kb on + strand, within EX28DRAFT_2134 at 2153.289 kb on + strand, within EX28DRAFT_2134 at 2153.290 kb on + strand, within EX28DRAFT_2134 at 2153.290 kb on + strand, within EX28DRAFT_2134 at 2153.291 kb on - strand, within EX28DRAFT_2134 at 2153.353 kb on + strand, within EX28DRAFT_2134 at 2153.699 kb on + strand, within EX28DRAFT_2134 at 2153.700 kb on - strand, within EX28DRAFT_2134 at 2153.700 kb on - strand, within EX28DRAFT_2134 at 2153.776 kb on + strand, within EX28DRAFT_2134 at 2153.799 kb on - strand, within EX28DRAFT_2134 at 2153.897 kb on + strand, within EX28DRAFT_2134 at 2153.898 kb on - strand, within EX28DRAFT_2134 at 2153.898 kb on - strand, within EX28DRAFT_2134 at 2153.898 kb on - strand, within EX28DRAFT_2134 at 2153.899 kb on + strand, within EX28DRAFT_2134 at 2153.899 kb on + strand, within EX28DRAFT_2134 at 2153.899 kb on + strand, within EX28DRAFT_2134 at 2153.900 kb on - strand, within EX28DRAFT_2134 at 2153.900 kb on - strand, within EX28DRAFT_2134 at 2153.926 kb on + strand, within EX28DRAFT_2134 at 2153.986 kb on + strand, within EX28DRAFT_2134 at 2153.987 kb on - strand, within EX28DRAFT_2134 at 2153.987 kb on - strand, within EX28DRAFT_2134 at 2154.140 kb on + strand at 2154.141 kb on - strand at 2154.141 kb on - strand at 2154.156 kb on - strand at 2154.181 kb on + strand at 2154.181 kb on + strand at 2154.186 kb on + strand at 2154.186 kb on + strand at 2154.187 kb on - strand at 2154.187 kb on - strand at 2154.542 kb on + strand, within EX28DRAFT_2135 at 2154.643 kb on + strand, within EX28DRAFT_2135 at 2154.643 kb on + strand, within EX28DRAFT_2135 at 2154.841 kb on + strand, within EX28DRAFT_2135 at 2154.913 kb on + strand, within EX28DRAFT_2135 at 2154.914 kb on - strand, within EX28DRAFT_2135 at 2155.266 kb on + strand, within EX28DRAFT_2135 at 2155.266 kb on + strand, within EX28DRAFT_2135 at 2155.267 kb on - strand, within EX28DRAFT_2135 at 2155.267 kb on - strand, within EX28DRAFT_2135 at 2155.787 kb on + strand, within EX28DRAFT_2135 at 2155.788 kb on - strand, within EX28DRAFT_2135 at 2155.895 kb on - strand at 2156.000 kb on - strand at 2156.069 kb on + strand at 2156.069 kb on + strand at 2156.078 kb on + strand at 2156.123 kb on + strand at 2156.249 kb on - strand, within EX28DRAFT_2136 at 2156.282 kb on + strand, within EX28DRAFT_2136 at 2156.354 kb on + strand, within EX28DRAFT_2136 at 2156.355 kb on - strand, within EX28DRAFT_2136 at 2156.809 kb on - strand, within EX28DRAFT_2136 at 2156.809 kb on - strand, within EX28DRAFT_2136 at 2156.910 kb on - strand, within EX28DRAFT_2136 at 2156.925 kb on - strand at 2157.044 kb on + strand at 2157.044 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,153,245 + EX28DRAFT_2134 0.40 -0.3 2,153,289 + EX28DRAFT_2134 0.43 -0.2 2,153,290 + EX28DRAFT_2134 0.43 -0.2 2,153,290 + EX28DRAFT_2134 0.43 -0.9 2,153,291 - EX28DRAFT_2134 0.43 +0.3 2,153,353 + EX28DRAFT_2134 0.47 -1.7 2,153,699 + EX28DRAFT_2134 0.70 -0.7 2,153,700 - EX28DRAFT_2134 0.70 -0.1 2,153,700 - EX28DRAFT_2134 0.70 -0.9 2,153,776 + EX28DRAFT_2134 0.75 -0.7 2,153,799 - EX28DRAFT_2134 0.76 +2.2 2,153,897 + EX28DRAFT_2134 0.83 -1.5 2,153,898 - EX28DRAFT_2134 0.83 -3.4 2,153,898 - EX28DRAFT_2134 0.83 +0.6 2,153,898 - EX28DRAFT_2134 0.83 -0.1 2,153,899 + EX28DRAFT_2134 0.83 -0.1 2,153,899 + EX28DRAFT_2134 0.83 -0.2 2,153,899 + EX28DRAFT_2134 0.83 -0.7 2,153,900 - EX28DRAFT_2134 0.83 +0.7 2,153,900 - EX28DRAFT_2134 0.83 +0.5 2,153,926 + EX28DRAFT_2134 0.85 -0.3 2,153,986 + EX28DRAFT_2134 0.89 -0.5 2,153,987 - EX28DRAFT_2134 0.89 -0.3 2,153,987 - EX28DRAFT_2134 0.89 +0.4 2,154,140 + -0.1 2,154,141 - +0.8 2,154,141 - -0.8 2,154,156 - -0.3 2,154,181 + +0.7 2,154,181 + +2.0 2,154,186 + -0.7 2,154,186 + -1.0 2,154,187 - +0.3 2,154,187 - +0.2 2,154,542 + EX28DRAFT_2135 0.19 -0.0 2,154,643 + EX28DRAFT_2135 0.24 -1.8 2,154,643 + EX28DRAFT_2135 0.24 -0.1 2,154,841 + EX28DRAFT_2135 0.35 -0.2 2,154,913 + EX28DRAFT_2135 0.39 -0.9 2,154,914 - EX28DRAFT_2135 0.39 -0.7 2,155,266 + EX28DRAFT_2135 0.58 -0.9 2,155,266 + EX28DRAFT_2135 0.58 -0.4 2,155,267 - EX28DRAFT_2135 0.58 -0.4 2,155,267 - EX28DRAFT_2135 0.58 -1.6 2,155,787 + EX28DRAFT_2135 0.86 -0.7 2,155,788 - EX28DRAFT_2135 0.86 -0.8 2,155,895 - -1.4 2,156,000 - -0.9 2,156,069 + -0.9 2,156,069 + +0.2 2,156,078 + +0.2 2,156,123 + -1.0 2,156,249 - EX28DRAFT_2136 0.19 +0.6 2,156,282 + EX28DRAFT_2136 0.23 -1.1 2,156,354 + EX28DRAFT_2136 0.30 -0.1 2,156,355 - EX28DRAFT_2136 0.30 +1.4 2,156,809 - EX28DRAFT_2136 0.78 +0.4 2,156,809 - EX28DRAFT_2136 0.78 -0.2 2,156,910 - EX28DRAFT_2136 0.89 +0.0 2,156,925 - +0.2 2,157,044 + +0.9 2,157,044 + -0.8
Or see this region's nucleotide sequence