Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2135

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2134 and EX28DRAFT_2135 are separated by 23 nucleotidesEX28DRAFT_2135 and EX28DRAFT_2136 are separated by 11 nucleotides EX28DRAFT_2134: EX28DRAFT_2134 - ABC-type dipeptide transport system, periplasmic component, at 2,152,623 to 2,154,161 _2134 EX28DRAFT_2135: EX28DRAFT_2135 - ATPase components of various ABC-type transport systems, contain duplicated ATPase, at 2,154,185 to 2,156,056 _2135 EX28DRAFT_2136: EX28DRAFT_2136 - Asparaginase, at 2,156,068 to 2,157,012 _2136 Position (kb) 2154 2155 2156 2157Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2153.245 kb on + strand, within EX28DRAFT_2134at 2153.289 kb on + strand, within EX28DRAFT_2134at 2153.290 kb on + strand, within EX28DRAFT_2134at 2153.290 kb on + strand, within EX28DRAFT_2134at 2153.291 kb on - strand, within EX28DRAFT_2134at 2153.353 kb on + strand, within EX28DRAFT_2134at 2153.699 kb on + strand, within EX28DRAFT_2134at 2153.700 kb on - strand, within EX28DRAFT_2134at 2153.700 kb on - strand, within EX28DRAFT_2134at 2153.776 kb on + strand, within EX28DRAFT_2134at 2153.799 kb on - strand, within EX28DRAFT_2134at 2153.897 kb on + strand, within EX28DRAFT_2134at 2153.898 kb on - strand, within EX28DRAFT_2134at 2153.898 kb on - strand, within EX28DRAFT_2134at 2153.898 kb on - strand, within EX28DRAFT_2134at 2153.899 kb on + strand, within EX28DRAFT_2134at 2153.899 kb on + strand, within EX28DRAFT_2134at 2153.899 kb on + strand, within EX28DRAFT_2134at 2153.900 kb on - strand, within EX28DRAFT_2134at 2153.900 kb on - strand, within EX28DRAFT_2134at 2153.926 kb on + strand, within EX28DRAFT_2134at 2153.986 kb on + strand, within EX28DRAFT_2134at 2153.987 kb on - strand, within EX28DRAFT_2134at 2153.987 kb on - strand, within EX28DRAFT_2134at 2154.140 kb on + strandat 2154.141 kb on - strandat 2154.141 kb on - strandat 2154.156 kb on - strandat 2154.181 kb on + strandat 2154.181 kb on + strandat 2154.186 kb on + strandat 2154.186 kb on + strandat 2154.187 kb on - strandat 2154.187 kb on - strandat 2154.542 kb on + strand, within EX28DRAFT_2135at 2154.643 kb on + strand, within EX28DRAFT_2135at 2154.643 kb on + strand, within EX28DRAFT_2135at 2154.841 kb on + strand, within EX28DRAFT_2135at 2154.913 kb on + strand, within EX28DRAFT_2135at 2154.914 kb on - strand, within EX28DRAFT_2135at 2155.266 kb on + strand, within EX28DRAFT_2135at 2155.266 kb on + strand, within EX28DRAFT_2135at 2155.267 kb on - strand, within EX28DRAFT_2135at 2155.267 kb on - strand, within EX28DRAFT_2135at 2155.787 kb on + strand, within EX28DRAFT_2135at 2155.788 kb on - strand, within EX28DRAFT_2135at 2155.895 kb on - strandat 2156.000 kb on - strandat 2156.069 kb on + strandat 2156.069 kb on + strandat 2156.078 kb on + strandat 2156.123 kb on + strandat 2156.249 kb on - strand, within EX28DRAFT_2136at 2156.282 kb on + strand, within EX28DRAFT_2136at 2156.354 kb on + strand, within EX28DRAFT_2136at 2156.355 kb on - strand, within EX28DRAFT_2136at 2156.809 kb on - strand, within EX28DRAFT_2136at 2156.809 kb on - strand, within EX28DRAFT_2136at 2156.910 kb on - strand, within EX28DRAFT_2136at 2156.925 kb on - strandat 2157.044 kb on + strandat 2157.044 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,153,245 + EX28DRAFT_2134 0.40 -0.3
2,153,289 + EX28DRAFT_2134 0.43 -0.2
2,153,290 + EX28DRAFT_2134 0.43 -0.2
2,153,290 + EX28DRAFT_2134 0.43 -0.9
2,153,291 - EX28DRAFT_2134 0.43 +0.3
2,153,353 + EX28DRAFT_2134 0.47 -1.7
2,153,699 + EX28DRAFT_2134 0.70 -0.7
2,153,700 - EX28DRAFT_2134 0.70 -0.1
2,153,700 - EX28DRAFT_2134 0.70 -0.9
2,153,776 + EX28DRAFT_2134 0.75 -0.7
2,153,799 - EX28DRAFT_2134 0.76 +2.2
2,153,897 + EX28DRAFT_2134 0.83 -1.5
2,153,898 - EX28DRAFT_2134 0.83 -3.4
2,153,898 - EX28DRAFT_2134 0.83 +0.6
2,153,898 - EX28DRAFT_2134 0.83 -0.1
2,153,899 + EX28DRAFT_2134 0.83 -0.1
2,153,899 + EX28DRAFT_2134 0.83 -0.2
2,153,899 + EX28DRAFT_2134 0.83 -0.7
2,153,900 - EX28DRAFT_2134 0.83 +0.7
2,153,900 - EX28DRAFT_2134 0.83 +0.5
2,153,926 + EX28DRAFT_2134 0.85 -0.3
2,153,986 + EX28DRAFT_2134 0.89 -0.5
2,153,987 - EX28DRAFT_2134 0.89 -0.3
2,153,987 - EX28DRAFT_2134 0.89 +0.4
2,154,140 + -0.1
2,154,141 - +0.8
2,154,141 - -0.8
2,154,156 - -0.3
2,154,181 + +0.7
2,154,181 + +2.0
2,154,186 + -0.7
2,154,186 + -1.0
2,154,187 - +0.3
2,154,187 - +0.2
2,154,542 + EX28DRAFT_2135 0.19 -0.0
2,154,643 + EX28DRAFT_2135 0.24 -1.8
2,154,643 + EX28DRAFT_2135 0.24 -0.1
2,154,841 + EX28DRAFT_2135 0.35 -0.2
2,154,913 + EX28DRAFT_2135 0.39 -0.9
2,154,914 - EX28DRAFT_2135 0.39 -0.7
2,155,266 + EX28DRAFT_2135 0.58 -0.9
2,155,266 + EX28DRAFT_2135 0.58 -0.4
2,155,267 - EX28DRAFT_2135 0.58 -0.4
2,155,267 - EX28DRAFT_2135 0.58 -1.6
2,155,787 + EX28DRAFT_2135 0.86 -0.7
2,155,788 - EX28DRAFT_2135 0.86 -0.8
2,155,895 - -1.4
2,156,000 - -0.9
2,156,069 + -0.9
2,156,069 + +0.2
2,156,078 + +0.2
2,156,123 + -1.0
2,156,249 - EX28DRAFT_2136 0.19 +0.6
2,156,282 + EX28DRAFT_2136 0.23 -1.1
2,156,354 + EX28DRAFT_2136 0.30 -0.1
2,156,355 - EX28DRAFT_2136 0.30 +1.4
2,156,809 - EX28DRAFT_2136 0.78 +0.4
2,156,809 - EX28DRAFT_2136 0.78 -0.2
2,156,910 - EX28DRAFT_2136 0.89 +0.0
2,156,925 - +0.2
2,157,044 + +0.9
2,157,044 + -0.8

Or see this region's nucleotide sequence