Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2101 and EX28DRAFT_2102 are separated by 48 nucleotides EX28DRAFT_2102 and EX28DRAFT_2103 are separated by 184 nucleotides EX28DRAFT_2103 and EX28DRAFT_2104 are separated by 30 nucleotides
EX28DRAFT_2101: EX28DRAFT_2101 - alpha-L-glutamate ligase, RimK family, at 2,124,945 to 2,125,868
_2101
EX28DRAFT_2102: EX28DRAFT_2102 - Nitroreductase, at 2,125,917 to 2,126,639
_2102
EX28DRAFT_2103: EX28DRAFT_2103 - Glutaredoxin, GrxA family, at 2,126,824 to 2,127,093
_2103
EX28DRAFT_2104: EX28DRAFT_2104 - Putative inner membrane protein of Enterobacteriaceae, at 2,127,124 to 2,127,498
_2104
Position (kb)
2125
2126
2127 Strain fitness (log2 ratio)
-2
-1
0
1 at 2125.107 kb on + strand, within EX28DRAFT_2101 at 2125.176 kb on - strand, within EX28DRAFT_2101 at 2125.211 kb on + strand, within EX28DRAFT_2101 at 2125.312 kb on + strand, within EX28DRAFT_2101 at 2125.312 kb on + strand, within EX28DRAFT_2101 at 2125.313 kb on - strand, within EX28DRAFT_2101 at 2125.313 kb on - strand, within EX28DRAFT_2101 at 2125.568 kb on + strand, within EX28DRAFT_2101 at 2125.633 kb on + strand, within EX28DRAFT_2101 at 2125.637 kb on - strand, within EX28DRAFT_2101 at 2125.734 kb on - strand, within EX28DRAFT_2101 at 2125.735 kb on + strand, within EX28DRAFT_2101 at 2125.735 kb on + strand, within EX28DRAFT_2101 at 2125.735 kb on + strand, within EX28DRAFT_2101 at 2125.735 kb on + strand, within EX28DRAFT_2101 at 2125.735 kb on + strand, within EX28DRAFT_2101 at 2125.736 kb on - strand, within EX28DRAFT_2101 at 2125.736 kb on - strand, within EX28DRAFT_2101 at 2125.736 kb on - strand, within EX28DRAFT_2101 at 2125.834 kb on - strand at 2125.888 kb on + strand at 2125.889 kb on - strand at 2125.891 kb on - strand at 2125.891 kb on - strand at 2125.948 kb on + strand at 2125.948 kb on + strand at 2125.959 kb on - strand at 2126.045 kb on - strand, within EX28DRAFT_2102 at 2126.241 kb on - strand, within EX28DRAFT_2102 at 2126.257 kb on + strand, within EX28DRAFT_2102 at 2126.257 kb on + strand, within EX28DRAFT_2102 at 2126.258 kb on - strand, within EX28DRAFT_2102 at 2126.546 kb on + strand, within EX28DRAFT_2102 at 2126.625 kb on + strand at 2126.682 kb on + strand at 2126.683 kb on - strand at 2126.704 kb on - strand at 2126.704 kb on - strand at 2126.704 kb on - strand at 2126.718 kb on - strand at 2126.718 kb on - strand at 2126.723 kb on + strand at 2126.723 kb on + strand at 2126.723 kb on + strand at 2126.724 kb on - strand at 2126.728 kb on + strand at 2126.779 kb on + strand at 2126.779 kb on + strand at 2126.780 kb on - strand at 2126.780 kb on - strand at 2126.780 kb on - strand at 2126.781 kb on + strand at 2126.781 kb on + strand at 2126.782 kb on - strand at 2126.782 kb on - strand at 2126.782 kb on - strand at 2126.782 kb on - strand at 2126.788 kb on + strand at 2126.789 kb on - strand at 2127.091 kb on + strand at 2127.125 kb on + strand at 2127.147 kb on + strand at 2127.156 kb on + strand at 2127.157 kb on - strand at 2127.170 kb on + strand, within EX28DRAFT_2104 at 2127.170 kb on + strand, within EX28DRAFT_2104 at 2127.171 kb on - strand, within EX28DRAFT_2104 at 2127.247 kb on + strand, within EX28DRAFT_2104 at 2127.251 kb on + strand, within EX28DRAFT_2104 at 2127.251 kb on + strand, within EX28DRAFT_2104 at 2127.251 kb on + strand, within EX28DRAFT_2104 at 2127.252 kb on - strand, within EX28DRAFT_2104 at 2127.447 kb on + strand, within EX28DRAFT_2104 at 2127.489 kb on + strand at 2127.489 kb on + strand at 2127.514 kb on + strand at 2127.514 kb on + strand at 2127.515 kb on - strand at 2127.528 kb on - strand at 2127.608 kb on + strand at 2127.608 kb on + strand at 2127.608 kb on + strand at 2127.609 kb on - strand at 2127.612 kb on + strand at 2127.627 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,125,107 + EX28DRAFT_2101 0.18 +0.4 2,125,176 - EX28DRAFT_2101 0.25 -0.1 2,125,211 + EX28DRAFT_2101 0.29 -0.2 2,125,312 + EX28DRAFT_2101 0.40 +0.3 2,125,312 + EX28DRAFT_2101 0.40 +0.1 2,125,313 - EX28DRAFT_2101 0.40 +0.6 2,125,313 - EX28DRAFT_2101 0.40 +1.2 2,125,568 + EX28DRAFT_2101 0.67 -0.4 2,125,633 + EX28DRAFT_2101 0.74 +0.5 2,125,637 - EX28DRAFT_2101 0.75 +1.0 2,125,734 - EX28DRAFT_2101 0.85 +0.2 2,125,735 + EX28DRAFT_2101 0.85 -0.1 2,125,735 + EX28DRAFT_2101 0.85 -0.9 2,125,735 + EX28DRAFT_2101 0.85 +0.1 2,125,735 + EX28DRAFT_2101 0.85 -1.0 2,125,735 + EX28DRAFT_2101 0.85 +0.2 2,125,736 - EX28DRAFT_2101 0.86 -0.3 2,125,736 - EX28DRAFT_2101 0.86 -0.8 2,125,736 - EX28DRAFT_2101 0.86 +0.4 2,125,834 - -0.1 2,125,888 + -1.2 2,125,889 - -0.3 2,125,891 - -0.9 2,125,891 - +1.4 2,125,948 + +0.1 2,125,948 + +0.5 2,125,959 - +0.5 2,126,045 - EX28DRAFT_2102 0.18 +0.3 2,126,241 - EX28DRAFT_2102 0.45 +0.1 2,126,257 + EX28DRAFT_2102 0.47 -1.3 2,126,257 + EX28DRAFT_2102 0.47 -1.9 2,126,258 - EX28DRAFT_2102 0.47 -0.4 2,126,546 + EX28DRAFT_2102 0.87 -0.1 2,126,625 + +0.3 2,126,682 + -0.1 2,126,683 - +0.5 2,126,704 - +0.1 2,126,704 - -0.3 2,126,704 - +0.4 2,126,718 - -0.1 2,126,718 - +0.7 2,126,723 + +0.6 2,126,723 + +0.0 2,126,723 + -0.1 2,126,724 - -0.5 2,126,728 + -0.1 2,126,779 + +0.1 2,126,779 + +0.2 2,126,780 - -0.3 2,126,780 - -1.1 2,126,780 - -1.8 2,126,781 + +0.9 2,126,781 + +0.1 2,126,782 - +0.8 2,126,782 - -1.5 2,126,782 - +0.3 2,126,782 - +0.1 2,126,788 + -0.3 2,126,789 - -0.0 2,127,091 + +0.3 2,127,125 + -0.7 2,127,147 + -0.2 2,127,156 + -1.0 2,127,157 - +0.1 2,127,170 + EX28DRAFT_2104 0.12 -0.5 2,127,170 + EX28DRAFT_2104 0.12 +0.4 2,127,171 - EX28DRAFT_2104 0.13 -0.4 2,127,247 + EX28DRAFT_2104 0.33 +0.8 2,127,251 + EX28DRAFT_2104 0.34 -0.7 2,127,251 + EX28DRAFT_2104 0.34 +0.7 2,127,251 + EX28DRAFT_2104 0.34 +0.8 2,127,252 - EX28DRAFT_2104 0.34 +0.2 2,127,447 + EX28DRAFT_2104 0.86 -0.3 2,127,489 + +0.2 2,127,489 + -0.0 2,127,514 + +0.4 2,127,514 + -0.4 2,127,515 - -0.1 2,127,528 - -1.2 2,127,608 + +0.4 2,127,608 + -0.3 2,127,608 + +1.2 2,127,609 - -0.6 2,127,612 + +0.0 2,127,627 - -0.7
Or see this region's nucleotide sequence