Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2056

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2055 and EX28DRAFT_2056 overlap by 4 nucleotidesEX28DRAFT_2056 and EX28DRAFT_2057 are separated by 372 nucleotides EX28DRAFT_2055: EX28DRAFT_2055 - Uncharacterized protein conserved in bacteria, at 2,076,713 to 2,077,669 _2055 EX28DRAFT_2056: EX28DRAFT_2056 - Predicted ATP-dependent endonuclease of the OLD family, at 2,077,666 to 2,079,324 _2056 EX28DRAFT_2057: EX28DRAFT_2057 - MIP family channel proteins, at 2,079,697 to 2,080,392 _2057 Position (kb) 2077 2078 2079 2080Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2076.689 kb on - strandat 2076.709 kb on + strandat 2076.710 kb on - strandat 2076.710 kb on - strandat 2076.710 kb on - strandat 2076.710 kb on - strandat 2077.228 kb on + strand, within EX28DRAFT_2055at 2077.432 kb on + strand, within EX28DRAFT_2055at 2077.433 kb on - strand, within EX28DRAFT_2055at 2077.433 kb on - strand, within EX28DRAFT_2055at 2077.433 kb on - strand, within EX28DRAFT_2055at 2077.433 kb on - strand, within EX28DRAFT_2055at 2077.540 kb on + strand, within EX28DRAFT_2055at 2077.541 kb on - strand, within EX28DRAFT_2055at 2077.893 kb on - strand, within EX28DRAFT_2056at 2077.896 kb on + strand, within EX28DRAFT_2056at 2077.896 kb on + strand, within EX28DRAFT_2056at 2077.896 kb on + strand, within EX28DRAFT_2056at 2077.897 kb on - strand, within EX28DRAFT_2056at 2077.897 kb on - strand, within EX28DRAFT_2056at 2077.897 kb on - strand, within EX28DRAFT_2056at 2077.897 kb on - strand, within EX28DRAFT_2056at 2077.989 kb on - strand, within EX28DRAFT_2056at 2078.368 kb on - strand, within EX28DRAFT_2056at 2078.670 kb on - strand, within EX28DRAFT_2056at 2079.099 kb on + strand, within EX28DRAFT_2056at 2079.282 kb on + strandat 2079.282 kb on + strandat 2079.324 kb on + strandat 2079.360 kb on + strandat 2079.360 kb on + strandat 2079.370 kb on + strandat 2079.384 kb on + strandat 2079.384 kb on + strandat 2079.487 kb on + strandat 2079.488 kb on - strandat 2079.488 kb on - strandat 2079.488 kb on - strandat 2079.488 kb on - strandat 2079.510 kb on - strandat 2079.516 kb on + strandat 2079.516 kb on + strandat 2079.516 kb on + strandat 2079.517 kb on - strandat 2079.517 kb on - strandat 2079.559 kb on - strandat 2079.616 kb on - strandat 2079.652 kb on + strandat 2079.652 kb on + strandat 2079.652 kb on + strandat 2079.680 kb on - strandat 2079.729 kb on + strandat 2079.744 kb on - strandat 2079.836 kb on + strand, within EX28DRAFT_2057at 2079.836 kb on + strand, within EX28DRAFT_2057at 2079.837 kb on - strand, within EX28DRAFT_2057at 2079.865 kb on - strand, within EX28DRAFT_2057at 2079.899 kb on + strand, within EX28DRAFT_2057at 2079.899 kb on + strand, within EX28DRAFT_2057at 2079.905 kb on + strand, within EX28DRAFT_2057at 2079.938 kb on + strand, within EX28DRAFT_2057at 2079.938 kb on + strand, within EX28DRAFT_2057at 2079.946 kb on + strand, within EX28DRAFT_2057at 2079.946 kb on + strand, within EX28DRAFT_2057at 2079.973 kb on - strand, within EX28DRAFT_2057at 2079.975 kb on + strand, within EX28DRAFT_2057at 2079.975 kb on + strand, within EX28DRAFT_2057at 2079.975 kb on + strand, within EX28DRAFT_2057at 2079.975 kb on + strand, within EX28DRAFT_2057at 2079.994 kb on + strand, within EX28DRAFT_2057at 2080.227 kb on + strand, within EX28DRAFT_2057

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,076,689 - +0.9
2,076,709 + -0.3
2,076,710 - -0.1
2,076,710 - -0.3
2,076,710 - -0.4
2,076,710 - +0.2
2,077,228 + EX28DRAFT_2055 0.54 -0.7
2,077,432 + EX28DRAFT_2055 0.75 +2.6
2,077,433 - EX28DRAFT_2055 0.75 -0.5
2,077,433 - EX28DRAFT_2055 0.75 +0.0
2,077,433 - EX28DRAFT_2055 0.75 +0.0
2,077,433 - EX28DRAFT_2055 0.75 -0.7
2,077,540 + EX28DRAFT_2055 0.86 +0.0
2,077,541 - EX28DRAFT_2055 0.87 +0.0
2,077,893 - EX28DRAFT_2056 0.14 -2.0
2,077,896 + EX28DRAFT_2056 0.14 -2.4
2,077,896 + EX28DRAFT_2056 0.14 -0.5
2,077,896 + EX28DRAFT_2056 0.14 -1.5
2,077,897 - EX28DRAFT_2056 0.14 -0.8
2,077,897 - EX28DRAFT_2056 0.14 -0.8
2,077,897 - EX28DRAFT_2056 0.14 -0.9
2,077,897 - EX28DRAFT_2056 0.14 -3.4
2,077,989 - EX28DRAFT_2056 0.19 -0.7
2,078,368 - EX28DRAFT_2056 0.42 -4.1
2,078,670 - EX28DRAFT_2056 0.61 -1.1
2,079,099 + EX28DRAFT_2056 0.86 -1.0
2,079,282 + -0.1
2,079,282 + +0.1
2,079,324 + -0.5
2,079,360 + -0.9
2,079,360 + -2.0
2,079,370 + -1.1
2,079,384 + -0.6
2,079,384 + -0.9
2,079,487 + -0.4
2,079,488 - -0.2
2,079,488 - +1.0
2,079,488 - +0.1
2,079,488 - +0.3
2,079,510 - +0.0
2,079,516 + -1.1
2,079,516 + +0.1
2,079,516 + +0.7
2,079,517 - +0.4
2,079,517 - +0.4
2,079,559 - +0.6
2,079,616 - -0.3
2,079,652 + -0.5
2,079,652 + -0.2
2,079,652 + -0.1
2,079,680 - +0.2
2,079,729 + +1.1
2,079,744 - -0.9
2,079,836 + EX28DRAFT_2057 0.20 +0.0
2,079,836 + EX28DRAFT_2057 0.20 +0.5
2,079,837 - EX28DRAFT_2057 0.20 +0.1
2,079,865 - EX28DRAFT_2057 0.24 +0.9
2,079,899 + EX28DRAFT_2057 0.29 -0.0
2,079,899 + EX28DRAFT_2057 0.29 -0.3
2,079,905 + EX28DRAFT_2057 0.30 -0.1
2,079,938 + EX28DRAFT_2057 0.35 +0.9
2,079,938 + EX28DRAFT_2057 0.35 -0.1
2,079,946 + EX28DRAFT_2057 0.36 -0.2
2,079,946 + EX28DRAFT_2057 0.36 -0.7
2,079,973 - EX28DRAFT_2057 0.40 +0.8
2,079,975 + EX28DRAFT_2057 0.40 +0.2
2,079,975 + EX28DRAFT_2057 0.40 +0.0
2,079,975 + EX28DRAFT_2057 0.40 -0.3
2,079,975 + EX28DRAFT_2057 0.40 -0.2
2,079,994 + EX28DRAFT_2057 0.43 -0.5
2,080,227 + EX28DRAFT_2057 0.76 +1.5

Or see this region's nucleotide sequence