Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2029

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2028 and EX28DRAFT_2029 are separated by 198 nucleotidesEX28DRAFT_2029 and EX28DRAFT_2030 are separated by 127 nucleotides EX28DRAFT_2028: EX28DRAFT_2028 - phosphoserine aminotransferase apoenzyme (EC 2.6.1.52), at 2,040,463 to 2,041,515 _2028 EX28DRAFT_2029: EX28DRAFT_2029 - Predicted membrane protein, at 2,041,714 to 2,042,406 _2029 EX28DRAFT_2030: EX28DRAFT_2030 - YcaO-type kinase domain, at 2,042,534 to 2,044,294 _2030 Position (kb) 2041 2042 2043Strain fitness (log2 ratio) -1 0 1at 2041.584 kb on - strandat 2041.638 kb on + strandat 2041.639 kb on - strandat 2041.813 kb on - strand, within EX28DRAFT_2029at 2041.813 kb on - strand, within EX28DRAFT_2029at 2041.813 kb on - strand, within EX28DRAFT_2029at 2041.820 kb on - strand, within EX28DRAFT_2029at 2041.884 kb on + strand, within EX28DRAFT_2029at 2041.916 kb on + strand, within EX28DRAFT_2029at 2041.916 kb on + strand, within EX28DRAFT_2029at 2041.916 kb on + strand, within EX28DRAFT_2029at 2041.919 kb on + strand, within EX28DRAFT_2029at 2041.920 kb on - strand, within EX28DRAFT_2029at 2041.920 kb on - strand, within EX28DRAFT_2029at 2041.996 kb on + strand, within EX28DRAFT_2029at 2041.996 kb on + strand, within EX28DRAFT_2029at 2042.025 kb on + strand, within EX28DRAFT_2029at 2042.026 kb on - strand, within EX28DRAFT_2029at 2042.038 kb on + strand, within EX28DRAFT_2029at 2042.039 kb on - strand, within EX28DRAFT_2029at 2042.149 kb on + strand, within EX28DRAFT_2029at 2042.150 kb on - strand, within EX28DRAFT_2029at 2042.201 kb on + strand, within EX28DRAFT_2029at 2042.201 kb on + strand, within EX28DRAFT_2029at 2042.202 kb on - strand, within EX28DRAFT_2029at 2042.322 kb on + strand, within EX28DRAFT_2029at 2042.322 kb on + strand, within EX28DRAFT_2029at 2042.323 kb on - strand, within EX28DRAFT_2029at 2042.323 kb on - strand, within EX28DRAFT_2029at 2042.324 kb on + strand, within EX28DRAFT_2029at 2042.324 kb on + strand, within EX28DRAFT_2029at 2042.370 kb on + strandat 2042.419 kb on + strandat 2042.512 kb on - strandat 2042.512 kb on - strandat 2042.516 kb on - strandat 2042.675 kb on - strandat 2042.759 kb on + strand, within EX28DRAFT_2030at 2042.784 kb on - strand, within EX28DRAFT_2030at 2042.815 kb on + strand, within EX28DRAFT_2030at 2043.035 kb on + strand, within EX28DRAFT_2030at 2043.035 kb on + strand, within EX28DRAFT_2030at 2043.035 kb on + strand, within EX28DRAFT_2030at 2043.036 kb on - strand, within EX28DRAFT_2030at 2043.036 kb on - strand, within EX28DRAFT_2030at 2043.036 kb on - strand, within EX28DRAFT_2030at 2043.036 kb on - strand, within EX28DRAFT_2030at 2043.036 kb on - strand, within EX28DRAFT_2030at 2043.065 kb on + strand, within EX28DRAFT_2030at 2043.065 kb on + strand, within EX28DRAFT_2030at 2043.065 kb on + strand, within EX28DRAFT_2030at 2043.066 kb on - strand, within EX28DRAFT_2030at 2043.392 kb on - strand, within EX28DRAFT_2030

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,041,584 - -0.2
2,041,638 + +0.1
2,041,639 - -0.4
2,041,813 - EX28DRAFT_2029 0.14 +1.0
2,041,813 - EX28DRAFT_2029 0.14 +0.2
2,041,813 - EX28DRAFT_2029 0.14 -0.0
2,041,820 - EX28DRAFT_2029 0.15 -0.1
2,041,884 + EX28DRAFT_2029 0.25 -0.7
2,041,916 + EX28DRAFT_2029 0.29 -0.2
2,041,916 + EX28DRAFT_2029 0.29 +0.2
2,041,916 + EX28DRAFT_2029 0.29 +0.0
2,041,919 + EX28DRAFT_2029 0.30 -0.2
2,041,920 - EX28DRAFT_2029 0.30 +0.1
2,041,920 - EX28DRAFT_2029 0.30 +0.1
2,041,996 + EX28DRAFT_2029 0.41 +0.1
2,041,996 + EX28DRAFT_2029 0.41 +0.2
2,042,025 + EX28DRAFT_2029 0.45 -0.6
2,042,026 - EX28DRAFT_2029 0.45 -0.3
2,042,038 + EX28DRAFT_2029 0.47 +0.6
2,042,039 - EX28DRAFT_2029 0.47 +0.2
2,042,149 + EX28DRAFT_2029 0.63 +1.1
2,042,150 - EX28DRAFT_2029 0.63 +0.7
2,042,201 + EX28DRAFT_2029 0.70 +0.1
2,042,201 + EX28DRAFT_2029 0.70 -0.3
2,042,202 - EX28DRAFT_2029 0.70 -0.2
2,042,322 + EX28DRAFT_2029 0.88 -0.3
2,042,322 + EX28DRAFT_2029 0.88 -0.3
2,042,323 - EX28DRAFT_2029 0.88 -0.3
2,042,323 - EX28DRAFT_2029 0.88 -0.8
2,042,324 + EX28DRAFT_2029 0.88 +0.0
2,042,324 + EX28DRAFT_2029 0.88 -0.3
2,042,370 + -0.8
2,042,419 + -0.8
2,042,512 - +0.3
2,042,512 - -0.5
2,042,516 - +0.2
2,042,675 - +0.9
2,042,759 + EX28DRAFT_2030 0.13 -0.1
2,042,784 - EX28DRAFT_2030 0.14 -0.1
2,042,815 + EX28DRAFT_2030 0.16 -0.3
2,043,035 + EX28DRAFT_2030 0.28 -0.1
2,043,035 + EX28DRAFT_2030 0.28 +1.3
2,043,035 + EX28DRAFT_2030 0.28 +0.8
2,043,036 - EX28DRAFT_2030 0.29 -1.0
2,043,036 - EX28DRAFT_2030 0.29 +0.2
2,043,036 - EX28DRAFT_2030 0.29 +0.5
2,043,036 - EX28DRAFT_2030 0.29 +0.4
2,043,036 - EX28DRAFT_2030 0.29 +0.0
2,043,065 + EX28DRAFT_2030 0.30 +0.0
2,043,065 + EX28DRAFT_2030 0.30 -0.1
2,043,065 + EX28DRAFT_2030 0.30 -0.5
2,043,066 - EX28DRAFT_2030 0.30 +0.4
2,043,392 - EX28DRAFT_2030 0.49 -0.1

Or see this region's nucleotide sequence