Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1967 and EX28DRAFT_1968 are separated by 75 nucleotides EX28DRAFT_1968 and EX28DRAFT_1969 are separated by 72 nucleotides
EX28DRAFT_1967: EX28DRAFT_1967 - hypothetical protein, at 1,969,643 to 1,970,386
_1967
EX28DRAFT_1968: EX28DRAFT_1968 - CS1 type fimbrial major subunit, at 1,970,462 to 1,970,968
_1968
EX28DRAFT_1969: EX28DRAFT_1969 - hypothetical protein, at 1,971,041 to 1,973,758
_1969
Position (kb)
1970
1971 Strain fitness (log2 ratio)
-2
-1
0
1 at 1969.658 kb on - strand at 1969.683 kb on - strand at 1969.846 kb on + strand, within EX28DRAFT_1967 at 1970.038 kb on + strand, within EX28DRAFT_1967 at 1970.170 kb on - strand, within EX28DRAFT_1967 at 1970.286 kb on + strand, within EX28DRAFT_1967 at 1970.321 kb on - strand at 1970.370 kb on + strand at 1970.445 kb on + strand at 1970.449 kb on + strand at 1970.458 kb on - strand at 1970.467 kb on + strand at 1970.468 kb on - strand at 1970.477 kb on - strand at 1970.539 kb on + strand, within EX28DRAFT_1968 at 1970.540 kb on - strand, within EX28DRAFT_1968 at 1970.576 kb on - strand, within EX28DRAFT_1968 at 1970.625 kb on - strand, within EX28DRAFT_1968 at 1970.625 kb on - strand, within EX28DRAFT_1968 at 1970.670 kb on + strand, within EX28DRAFT_1968 at 1970.671 kb on - strand, within EX28DRAFT_1968 at 1970.671 kb on - strand, within EX28DRAFT_1968 at 1970.671 kb on - strand, within EX28DRAFT_1968 at 1970.671 kb on - strand, within EX28DRAFT_1968 at 1970.807 kb on + strand, within EX28DRAFT_1968 at 1970.807 kb on + strand, within EX28DRAFT_1968 at 1970.808 kb on - strand, within EX28DRAFT_1968 at 1970.808 kb on - strand, within EX28DRAFT_1968 at 1970.809 kb on + strand, within EX28DRAFT_1968 at 1970.809 kb on + strand, within EX28DRAFT_1968 at 1970.909 kb on + strand, within EX28DRAFT_1968 at 1970.981 kb on + strand at 1970.982 kb on - strand at 1970.982 kb on - strand at 1971.179 kb on + strand at 1971.255 kb on + strand at 1971.255 kb on + strand at 1971.387 kb on - strand, within EX28DRAFT_1969 at 1971.392 kb on - strand, within EX28DRAFT_1969 at 1971.392 kb on - strand, within EX28DRAFT_1969 at 1971.394 kb on + strand, within EX28DRAFT_1969 at 1971.439 kb on + strand, within EX28DRAFT_1969 at 1971.439 kb on + strand, within EX28DRAFT_1969 at 1971.440 kb on - strand, within EX28DRAFT_1969 at 1971.620 kb on + strand, within EX28DRAFT_1969 at 1971.621 kb on - strand, within EX28DRAFT_1969 at 1971.625 kb on + strand, within EX28DRAFT_1969 at 1971.712 kb on + strand, within EX28DRAFT_1969 at 1971.725 kb on + strand, within EX28DRAFT_1969 at 1971.726 kb on - strand, within EX28DRAFT_1969 at 1971.726 kb on - strand, within EX28DRAFT_1969 at 1971.728 kb on + strand, within EX28DRAFT_1969 at 1971.728 kb on + strand, within EX28DRAFT_1969 at 1971.729 kb on - strand, within EX28DRAFT_1969 at 1971.729 kb on - strand, within EX28DRAFT_1969 at 1971.729 kb on - strand, within EX28DRAFT_1969 at 1971.784 kb on + strand, within EX28DRAFT_1969 at 1971.785 kb on - strand, within EX28DRAFT_1969 at 1971.954 kb on - strand, within EX28DRAFT_1969
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,969,658 - -0.7 1,969,683 - +0.6 1,969,846 + EX28DRAFT_1967 0.27 -1.2 1,970,038 + EX28DRAFT_1967 0.53 -0.1 1,970,170 - EX28DRAFT_1967 0.71 +0.0 1,970,286 + EX28DRAFT_1967 0.86 -0.1 1,970,321 - +0.5 1,970,370 + +0.7 1,970,445 + +0.2 1,970,449 + -0.1 1,970,458 - +0.1 1,970,467 + -0.3 1,970,468 - -0.2 1,970,477 - -0.0 1,970,539 + EX28DRAFT_1968 0.15 -0.5 1,970,540 - EX28DRAFT_1968 0.15 +0.0 1,970,576 - EX28DRAFT_1968 0.22 -0.4 1,970,625 - EX28DRAFT_1968 0.32 -0.2 1,970,625 - EX28DRAFT_1968 0.32 -0.1 1,970,670 + EX28DRAFT_1968 0.41 -0.0 1,970,671 - EX28DRAFT_1968 0.41 -0.2 1,970,671 - EX28DRAFT_1968 0.41 -0.6 1,970,671 - EX28DRAFT_1968 0.41 -0.4 1,970,671 - EX28DRAFT_1968 0.41 -0.6 1,970,807 + EX28DRAFT_1968 0.68 +0.0 1,970,807 + EX28DRAFT_1968 0.68 -0.2 1,970,808 - EX28DRAFT_1968 0.68 +0.4 1,970,808 - EX28DRAFT_1968 0.68 -0.2 1,970,809 + EX28DRAFT_1968 0.68 -1.2 1,970,809 + EX28DRAFT_1968 0.68 -0.1 1,970,909 + EX28DRAFT_1968 0.88 -0.9 1,970,981 + +0.2 1,970,982 - -0.3 1,970,982 - +0.2 1,971,179 + +0.0 1,971,255 + -0.2 1,971,255 + +0.1 1,971,387 - EX28DRAFT_1969 0.13 +0.0 1,971,392 - EX28DRAFT_1969 0.13 +0.3 1,971,392 - EX28DRAFT_1969 0.13 +0.8 1,971,394 + EX28DRAFT_1969 0.13 -1.3 1,971,439 + EX28DRAFT_1969 0.15 -1.4 1,971,439 + EX28DRAFT_1969 0.15 +0.3 1,971,440 - EX28DRAFT_1969 0.15 -0.0 1,971,620 + EX28DRAFT_1969 0.21 -0.3 1,971,621 - EX28DRAFT_1969 0.21 +0.2 1,971,625 + EX28DRAFT_1969 0.21 +0.0 1,971,712 + EX28DRAFT_1969 0.25 -0.2 1,971,725 + EX28DRAFT_1969 0.25 -0.1 1,971,726 - EX28DRAFT_1969 0.25 +0.1 1,971,726 - EX28DRAFT_1969 0.25 -1.1 1,971,728 + EX28DRAFT_1969 0.25 +0.2 1,971,728 + EX28DRAFT_1969 0.25 -0.3 1,971,729 - EX28DRAFT_1969 0.25 -0.3 1,971,729 - EX28DRAFT_1969 0.25 -2.6 1,971,729 - EX28DRAFT_1969 0.25 +0.9 1,971,784 + EX28DRAFT_1969 0.27 +0.5 1,971,785 - EX28DRAFT_1969 0.27 -0.4 1,971,954 - EX28DRAFT_1969 0.34 -0.3
Or see this region's nucleotide sequence