Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1832 and EX28DRAFT_1833 are separated by 2 nucleotides EX28DRAFT_1833 and EX28DRAFT_1834 are separated by 120 nucleotides EX28DRAFT_1834 and EX28DRAFT_1835 are separated by 91 nucleotides EX28DRAFT_1835 and EX28DRAFT_1836 are separated by 154 nucleotides
EX28DRAFT_1832: EX28DRAFT_1832 - conserved hypothetical protein, YceG family, at 1,849,350 to 1,850,372
_1832
EX28DRAFT_1833: EX28DRAFT_1833 - aminodeoxychorismate lyase, at 1,850,375 to 1,851,184
_1833
EX28DRAFT_1834: EX28DRAFT_1834 - beta-ketoacyl-acyl-carrier-protein synthase II, at 1,851,305 to 1,852,546
_1834
EX28DRAFT_1835: EX28DRAFT_1835 - acyl carrier protein, at 1,852,638 to 1,852,874
_1835
EX28DRAFT_1836: EX28DRAFT_1836 - 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100), at 1,853,029 to 1,853,763
_1836
Position (kb)
1851
1852
1853 Strain fitness (log2 ratio)
-2
-1
0
1 at 1850.376 kb on + strand at 1850.377 kb on - strand at 1850.394 kb on - strand at 1850.460 kb on - strand, within EX28DRAFT_1833 at 1850.528 kb on - strand, within EX28DRAFT_1833 at 1850.595 kb on - strand, within EX28DRAFT_1833 at 1850.648 kb on + strand, within EX28DRAFT_1833 at 1850.731 kb on + strand, within EX28DRAFT_1833 at 1850.731 kb on + strand, within EX28DRAFT_1833 at 1850.732 kb on - strand, within EX28DRAFT_1833 at 1850.767 kb on + strand, within EX28DRAFT_1833 at 1850.767 kb on + strand, within EX28DRAFT_1833 at 1851.001 kb on + strand, within EX28DRAFT_1833 at 1851.002 kb on - strand, within EX28DRAFT_1833 at 1851.013 kb on + strand, within EX28DRAFT_1833 at 1851.026 kb on + strand, within EX28DRAFT_1833 at 1851.027 kb on - strand, within EX28DRAFT_1833 at 1851.209 kb on + strand at 1851.254 kb on + strand at 1851.282 kb on + strand at 1851.359 kb on - strand at 1851.359 kb on - strand at 1851.359 kb on - strand at 1851.490 kb on - strand, within EX28DRAFT_1834 at 1851.668 kb on - strand, within EX28DRAFT_1834 at 1851.745 kb on - strand, within EX28DRAFT_1834 at 1852.039 kb on + strand, within EX28DRAFT_1834 at 1852.040 kb on - strand, within EX28DRAFT_1834 at 1852.040 kb on - strand, within EX28DRAFT_1834 at 1852.190 kb on - strand, within EX28DRAFT_1834 at 1852.388 kb on + strand, within EX28DRAFT_1834
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,850,376 + -0.0 1,850,377 - +0.2 1,850,394 - -2.6 1,850,460 - EX28DRAFT_1833 0.10 -0.4 1,850,528 - EX28DRAFT_1833 0.19 +0.0 1,850,595 - EX28DRAFT_1833 0.27 +0.4 1,850,648 + EX28DRAFT_1833 0.34 -0.2 1,850,731 + EX28DRAFT_1833 0.44 +0.8 1,850,731 + EX28DRAFT_1833 0.44 +0.1 1,850,732 - EX28DRAFT_1833 0.44 -0.3 1,850,767 + EX28DRAFT_1833 0.48 -0.5 1,850,767 + EX28DRAFT_1833 0.48 -0.2 1,851,001 + EX28DRAFT_1833 0.77 -0.9 1,851,002 - EX28DRAFT_1833 0.77 +1.2 1,851,013 + EX28DRAFT_1833 0.79 -1.3 1,851,026 + EX28DRAFT_1833 0.80 -0.3 1,851,027 - EX28DRAFT_1833 0.80 +0.1 1,851,209 + -0.6 1,851,254 + -0.4 1,851,282 + -0.0 1,851,359 - -1.6 1,851,359 - -2.0 1,851,359 - -0.1 1,851,490 - EX28DRAFT_1834 0.15 -0.8 1,851,668 - EX28DRAFT_1834 0.29 -0.3 1,851,745 - EX28DRAFT_1834 0.35 -0.3 1,852,039 + EX28DRAFT_1834 0.59 -0.8 1,852,040 - EX28DRAFT_1834 0.59 -1.3 1,852,040 - EX28DRAFT_1834 0.59 -0.9 1,852,190 - EX28DRAFT_1834 0.71 -1.3 1,852,388 + EX28DRAFT_1834 0.87 +0.9
Or see this region's nucleotide sequence