Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1791

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1790 and EX28DRAFT_1791 are separated by 205 nucleotidesEX28DRAFT_1791 and EX28DRAFT_1792 are separated by 290 nucleotidesEX28DRAFT_1792 and EX28DRAFT_1793 are separated by 74 nucleotides EX28DRAFT_1790: EX28DRAFT_1790 - FOG: EAL domain, at 1,803,843 to 1,805,393 _1790 EX28DRAFT_1791: EX28DRAFT_1791 - Predicted signal transduction protein containing sensor and EAL domains, at 1,805,599 to 1,807,098 _1791 EX28DRAFT_1792: EX28DRAFT_1792 - Protein of unknown function (DUF2543), at 1,807,389 to 1,807,634 _1792 EX28DRAFT_1793: EX28DRAFT_1793 - Predicted membrane protein, at 1,807,709 to 1,808,056 _1793 Position (kb) 1805 1806 1807 1808Strain fitness (log2 ratio) -2 -1 0 1at 1804.601 kb on + strand, within EX28DRAFT_1790at 1804.605 kb on + strand, within EX28DRAFT_1790at 1804.605 kb on + strand, within EX28DRAFT_1790at 1804.606 kb on - strand, within EX28DRAFT_1790at 1804.606 kb on - strand, within EX28DRAFT_1790at 1804.640 kb on - strand, within EX28DRAFT_1790at 1804.683 kb on - strand, within EX28DRAFT_1790at 1804.683 kb on - strand, within EX28DRAFT_1790at 1805.022 kb on + strand, within EX28DRAFT_1790at 1805.023 kb on - strand, within EX28DRAFT_1790at 1805.230 kb on - strand, within EX28DRAFT_1790at 1805.261 kb on + strandat 1805.261 kb on + strandat 1805.262 kb on - strandat 1805.262 kb on - strandat 1805.286 kb on + strandat 1805.287 kb on - strandat 1805.287 kb on - strandat 1805.297 kb on + strandat 1805.298 kb on - strandat 1805.436 kb on - strandat 1805.623 kb on - strandat 1805.672 kb on + strandat 1805.672 kb on + strandat 1805.673 kb on - strandat 1805.823 kb on + strand, within EX28DRAFT_1791at 1805.829 kb on + strand, within EX28DRAFT_1791at 1805.829 kb on + strand, within EX28DRAFT_1791at 1805.830 kb on - strand, within EX28DRAFT_1791at 1805.859 kb on + strand, within EX28DRAFT_1791at 1805.938 kb on - strand, within EX28DRAFT_1791at 1806.013 kb on - strand, within EX28DRAFT_1791at 1806.013 kb on - strand, within EX28DRAFT_1791at 1806.015 kb on + strand, within EX28DRAFT_1791at 1806.021 kb on + strand, within EX28DRAFT_1791at 1806.044 kb on - strand, within EX28DRAFT_1791at 1806.216 kb on - strand, within EX28DRAFT_1791at 1806.312 kb on - strand, within EX28DRAFT_1791at 1806.312 kb on - strand, within EX28DRAFT_1791at 1806.316 kb on - strand, within EX28DRAFT_1791at 1806.324 kb on + strand, within EX28DRAFT_1791at 1806.328 kb on + strand, within EX28DRAFT_1791at 1806.329 kb on - strand, within EX28DRAFT_1791at 1806.354 kb on + strand, within EX28DRAFT_1791at 1806.354 kb on + strand, within EX28DRAFT_1791at 1806.355 kb on - strand, within EX28DRAFT_1791at 1806.363 kb on - strand, within EX28DRAFT_1791at 1806.547 kb on - strand, within EX28DRAFT_1791at 1806.794 kb on + strand, within EX28DRAFT_1791at 1806.899 kb on - strand, within EX28DRAFT_1791at 1807.097 kb on - strandat 1807.162 kb on + strandat 1807.182 kb on + strandat 1807.228 kb on + strandat 1807.229 kb on - strandat 1807.235 kb on - strandat 1807.237 kb on + strandat 1807.237 kb on + strandat 1807.238 kb on - strandat 1807.390 kb on + strandat 1807.531 kb on + strand, within EX28DRAFT_1792at 1807.532 kb on - strand, within EX28DRAFT_1792at 1807.588 kb on + strand, within EX28DRAFT_1792at 1807.674 kb on + strandat 1807.674 kb on + strandat 1807.674 kb on + strandat 1807.674 kb on + strandat 1807.675 kb on - strandat 1807.675 kb on - strandat 1807.688 kb on + strandat 1807.689 kb on - strandat 1807.755 kb on - strand, within EX28DRAFT_1793at 1807.755 kb on - strand, within EX28DRAFT_1793at 1807.755 kb on - strand, within EX28DRAFT_1793at 1807.759 kb on - strand, within EX28DRAFT_1793at 1807.759 kb on - strand, within EX28DRAFT_1793at 1807.759 kb on - strand, within EX28DRAFT_1793at 1807.759 kb on - strand, within EX28DRAFT_1793at 1807.896 kb on + strand, within EX28DRAFT_1793at 1807.896 kb on + strand, within EX28DRAFT_1793at 1807.896 kb on + strand, within EX28DRAFT_1793at 1807.897 kb on - strand, within EX28DRAFT_1793at 1807.897 kb on - strand, within EX28DRAFT_1793at 1807.897 kb on - strand, within EX28DRAFT_1793at 1807.897 kb on - strand, within EX28DRAFT_1793at 1808.011 kb on - strand, within EX28DRAFT_1793at 1808.011 kb on - strand, within EX28DRAFT_1793

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,804,601 + EX28DRAFT_1790 0.49 -1.0
1,804,605 + EX28DRAFT_1790 0.49 +0.1
1,804,605 + EX28DRAFT_1790 0.49 -0.8
1,804,606 - EX28DRAFT_1790 0.49 +0.5
1,804,606 - EX28DRAFT_1790 0.49 +0.0
1,804,640 - EX28DRAFT_1790 0.51 -0.4
1,804,683 - EX28DRAFT_1790 0.54 -0.9
1,804,683 - EX28DRAFT_1790 0.54 +0.1
1,805,022 + EX28DRAFT_1790 0.76 -0.2
1,805,023 - EX28DRAFT_1790 0.76 +0.1
1,805,230 - EX28DRAFT_1790 0.89 -1.4
1,805,261 + -0.1
1,805,261 + -1.0
1,805,262 - -0.5
1,805,262 - -0.2
1,805,286 + -1.3
1,805,287 - -0.0
1,805,287 - +0.2
1,805,297 + -1.1
1,805,298 - -0.3
1,805,436 - -1.3
1,805,623 - -0.5
1,805,672 + -1.0
1,805,672 + -1.2
1,805,673 - +0.1
1,805,823 + EX28DRAFT_1791 0.15 -0.2
1,805,829 + EX28DRAFT_1791 0.15 -0.1
1,805,829 + EX28DRAFT_1791 0.15 -0.4
1,805,830 - EX28DRAFT_1791 0.15 -0.9
1,805,859 + EX28DRAFT_1791 0.17 -1.3
1,805,938 - EX28DRAFT_1791 0.23 +0.1
1,806,013 - EX28DRAFT_1791 0.28 -1.0
1,806,013 - EX28DRAFT_1791 0.28 +0.4
1,806,015 + EX28DRAFT_1791 0.28 -0.5
1,806,021 + EX28DRAFT_1791 0.28 -0.3
1,806,044 - EX28DRAFT_1791 0.30 -0.4
1,806,216 - EX28DRAFT_1791 0.41 -0.5
1,806,312 - EX28DRAFT_1791 0.48 -0.5
1,806,312 - EX28DRAFT_1791 0.48 -0.5
1,806,316 - EX28DRAFT_1791 0.48 -0.5
1,806,324 + EX28DRAFT_1791 0.48 +0.1
1,806,328 + EX28DRAFT_1791 0.49 -0.6
1,806,329 - EX28DRAFT_1791 0.49 -0.5
1,806,354 + EX28DRAFT_1791 0.50 -0.7
1,806,354 + EX28DRAFT_1791 0.50 -2.1
1,806,355 - EX28DRAFT_1791 0.50 +0.8
1,806,363 - EX28DRAFT_1791 0.51 -0.5
1,806,547 - EX28DRAFT_1791 0.63 +0.2
1,806,794 + EX28DRAFT_1791 0.80 +0.1
1,806,899 - EX28DRAFT_1791 0.87 -0.6
1,807,097 - +0.0
1,807,162 + -0.1
1,807,182 + -0.1
1,807,228 + -0.3
1,807,229 - +0.5
1,807,235 - -1.0
1,807,237 + +1.0
1,807,237 + -0.0
1,807,238 - +0.0
1,807,390 + -0.4
1,807,531 + EX28DRAFT_1792 0.58 -0.2
1,807,532 - EX28DRAFT_1792 0.58 +0.6
1,807,588 + EX28DRAFT_1792 0.81 -0.6
1,807,674 + -0.9
1,807,674 + +0.3
1,807,674 + +0.3
1,807,674 + -0.2
1,807,675 - +0.4
1,807,675 - +0.1
1,807,688 + +0.1
1,807,689 - -0.1
1,807,755 - EX28DRAFT_1793 0.13 -1.0
1,807,755 - EX28DRAFT_1793 0.13 -0.1
1,807,755 - EX28DRAFT_1793 0.13 -0.2
1,807,759 - EX28DRAFT_1793 0.14 -0.1
1,807,759 - EX28DRAFT_1793 0.14 +1.3
1,807,759 - EX28DRAFT_1793 0.14 +1.3
1,807,759 - EX28DRAFT_1793 0.14 -0.8
1,807,896 + EX28DRAFT_1793 0.54 -2.5
1,807,896 + EX28DRAFT_1793 0.54 -0.1
1,807,896 + EX28DRAFT_1793 0.54 +0.0
1,807,897 - EX28DRAFT_1793 0.54 +0.2
1,807,897 - EX28DRAFT_1793 0.54 +0.3
1,807,897 - EX28DRAFT_1793 0.54 -1.2
1,807,897 - EX28DRAFT_1793 0.54 -0.4
1,808,011 - EX28DRAFT_1793 0.87 -0.8
1,808,011 - EX28DRAFT_1793 0.87 -0.4

Or see this region's nucleotide sequence