Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1773 and EX28DRAFT_1774 are separated by 73 nucleotides EX28DRAFT_1774 and EX28DRAFT_1775 are separated by 78 nucleotides
EX28DRAFT_1773: EX28DRAFT_1773 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 1,788,392 to 1,789,387
_1773
EX28DRAFT_1774: EX28DRAFT_1774 - Uncharacterized enzymes related to aldose 1-epimerase, at 1,789,461 to 1,790,345
_1774
EX28DRAFT_1775: EX28DRAFT_1775 - Outer membrane protein V, at 1,790,424 to 1,791,170
_1775
Position (kb)
1789
1790
1791 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1789.386 kb on - strand at 1789.441 kb on - strand at 1789.872 kb on + strand, within EX28DRAFT_1774 at 1789.957 kb on - strand, within EX28DRAFT_1774 at 1789.957 kb on - strand, within EX28DRAFT_1774 at 1790.006 kb on + strand, within EX28DRAFT_1774 at 1790.010 kb on + strand, within EX28DRAFT_1774 at 1790.010 kb on + strand, within EX28DRAFT_1774 at 1790.010 kb on + strand, within EX28DRAFT_1774 at 1790.010 kb on + strand, within EX28DRAFT_1774 at 1790.010 kb on + strand, within EX28DRAFT_1774 at 1790.011 kb on - strand, within EX28DRAFT_1774 at 1790.240 kb on + strand, within EX28DRAFT_1774 at 1790.240 kb on + strand, within EX28DRAFT_1774 at 1790.399 kb on + strand at 1790.399 kb on + strand at 1790.414 kb on + strand at 1790.435 kb on - strand at 1790.435 kb on - strand at 1790.435 kb on - strand at 1790.472 kb on - strand at 1790.531 kb on - strand, within EX28DRAFT_1775 at 1790.654 kb on - strand, within EX28DRAFT_1775 at 1790.656 kb on + strand, within EX28DRAFT_1775 at 1790.681 kb on - strand, within EX28DRAFT_1775 at 1790.726 kb on - strand, within EX28DRAFT_1775 at 1790.731 kb on + strand, within EX28DRAFT_1775 at 1790.753 kb on + strand, within EX28DRAFT_1775 at 1790.754 kb on - strand, within EX28DRAFT_1775 at 1790.819 kb on + strand, within EX28DRAFT_1775 at 1790.820 kb on - strand, within EX28DRAFT_1775 at 1790.820 kb on - strand, within EX28DRAFT_1775 at 1790.820 kb on - strand, within EX28DRAFT_1775 at 1790.824 kb on - strand, within EX28DRAFT_1775 at 1790.827 kb on + strand, within EX28DRAFT_1775 at 1790.828 kb on - strand, within EX28DRAFT_1775 at 1790.828 kb on - strand, within EX28DRAFT_1775 at 1790.921 kb on - strand, within EX28DRAFT_1775 at 1790.921 kb on - strand, within EX28DRAFT_1775 at 1790.924 kb on - strand, within EX28DRAFT_1775 at 1790.965 kb on + strand, within EX28DRAFT_1775 at 1790.965 kb on + strand, within EX28DRAFT_1775 at 1790.966 kb on - strand, within EX28DRAFT_1775 at 1790.966 kb on - strand, within EX28DRAFT_1775 at 1790.966 kb on - strand, within EX28DRAFT_1775 at 1791.010 kb on + strand, within EX28DRAFT_1775 at 1791.010 kb on + strand, within EX28DRAFT_1775 at 1791.010 kb on + strand, within EX28DRAFT_1775 at 1791.053 kb on + strand, within EX28DRAFT_1775 at 1791.054 kb on - strand, within EX28DRAFT_1775 at 1791.054 kb on - strand, within EX28DRAFT_1775 at 1791.066 kb on - strand, within EX28DRAFT_1775 at 1791.144 kb on + strand at 1791.195 kb on + strand at 1791.195 kb on + strand at 1791.309 kb on + strand at 1791.310 kb on - strand at 1791.310 kb on - strand at 1791.312 kb on - strand at 1791.339 kb on + strand at 1791.339 kb on + strand at 1791.339 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,789,386 - +0.8 1,789,441 - -0.4 1,789,872 + EX28DRAFT_1774 0.46 +0.6 1,789,957 - EX28DRAFT_1774 0.56 +0.4 1,789,957 - EX28DRAFT_1774 0.56 +0.3 1,790,006 + EX28DRAFT_1774 0.62 +0.5 1,790,010 + EX28DRAFT_1774 0.62 +1.6 1,790,010 + EX28DRAFT_1774 0.62 -0.6 1,790,010 + EX28DRAFT_1774 0.62 +0.3 1,790,010 + EX28DRAFT_1774 0.62 -0.3 1,790,010 + EX28DRAFT_1774 0.62 +0.2 1,790,011 - EX28DRAFT_1774 0.62 +0.1 1,790,240 + EX28DRAFT_1774 0.88 +0.8 1,790,240 + EX28DRAFT_1774 0.88 -0.8 1,790,399 + -0.3 1,790,399 + -0.5 1,790,414 + -0.2 1,790,435 - -0.4 1,790,435 - +0.3 1,790,435 - -0.2 1,790,472 - -0.1 1,790,531 - EX28DRAFT_1775 0.14 -1.3 1,790,654 - EX28DRAFT_1775 0.31 -2.7 1,790,656 + EX28DRAFT_1775 0.31 -0.2 1,790,681 - EX28DRAFT_1775 0.34 +0.1 1,790,726 - EX28DRAFT_1775 0.40 -0.6 1,790,731 + EX28DRAFT_1775 0.41 +0.4 1,790,753 + EX28DRAFT_1775 0.44 -0.9 1,790,754 - EX28DRAFT_1775 0.44 +0.2 1,790,819 + EX28DRAFT_1775 0.53 +0.2 1,790,820 - EX28DRAFT_1775 0.53 -0.0 1,790,820 - EX28DRAFT_1775 0.53 +1.0 1,790,820 - EX28DRAFT_1775 0.53 -0.1 1,790,824 - EX28DRAFT_1775 0.54 +0.0 1,790,827 + EX28DRAFT_1775 0.54 -0.1 1,790,828 - EX28DRAFT_1775 0.54 +0.0 1,790,828 - EX28DRAFT_1775 0.54 +0.7 1,790,921 - EX28DRAFT_1775 0.67 +0.5 1,790,921 - EX28DRAFT_1775 0.67 -1.1 1,790,924 - EX28DRAFT_1775 0.67 +2.4 1,790,965 + EX28DRAFT_1775 0.72 +0.4 1,790,965 + EX28DRAFT_1775 0.72 +0.1 1,790,966 - EX28DRAFT_1775 0.73 -0.5 1,790,966 - EX28DRAFT_1775 0.73 +0.0 1,790,966 - EX28DRAFT_1775 0.73 +0.1 1,791,010 + EX28DRAFT_1775 0.78 +0.2 1,791,010 + EX28DRAFT_1775 0.78 -0.8 1,791,010 + EX28DRAFT_1775 0.78 -0.0 1,791,053 + EX28DRAFT_1775 0.84 -0.2 1,791,054 - EX28DRAFT_1775 0.84 +0.3 1,791,054 - EX28DRAFT_1775 0.84 +0.0 1,791,066 - EX28DRAFT_1775 0.86 +1.2 1,791,144 + -0.2 1,791,195 + -0.8 1,791,195 + +0.6 1,791,309 + +0.2 1,791,310 - -1.7 1,791,310 - +0.0 1,791,312 - -0.2 1,791,339 + +0.1 1,791,339 + -0.2 1,791,339 + +0.1
Or see this region's nucleotide sequence