Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1766

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1765 and EX28DRAFT_1766 are separated by 116 nucleotidesEX28DRAFT_1766 and EX28DRAFT_1767 are separated by 167 nucleotides EX28DRAFT_1765: EX28DRAFT_1765 - selenophosphate synthase (EC 2.7.9.3), at 1,780,365 to 1,781,408 _1765 EX28DRAFT_1766: EX28DRAFT_1766 - Nitroreductase, at 1,781,525 to 1,782,076 _1766 EX28DRAFT_1767: EX28DRAFT_1767 - signal peptide peptidase SppA, 67K type, at 1,782,244 to 1,784,100 _1767 Position (kb) 1781 1782 1783Strain fitness (log2 ratio) -1 0 1at 1780.568 kb on - strand, within EX28DRAFT_1765at 1780.616 kb on + strand, within EX28DRAFT_1765at 1780.617 kb on - strand, within EX28DRAFT_1765at 1780.618 kb on + strand, within EX28DRAFT_1765at 1780.619 kb on - strand, within EX28DRAFT_1765at 1780.619 kb on - strand, within EX28DRAFT_1765at 1780.619 kb on - strand, within EX28DRAFT_1765at 1780.619 kb on - strand, within EX28DRAFT_1765at 1780.619 kb on - strand, within EX28DRAFT_1765at 1780.850 kb on + strand, within EX28DRAFT_1765at 1780.985 kb on + strand, within EX28DRAFT_1765at 1780.986 kb on - strand, within EX28DRAFT_1765at 1780.986 kb on - strand, within EX28DRAFT_1765at 1780.986 kb on - strand, within EX28DRAFT_1765at 1780.986 kb on - strand, within EX28DRAFT_1765at 1781.198 kb on + strand, within EX28DRAFT_1765at 1781.199 kb on - strand, within EX28DRAFT_1765at 1781.238 kb on + strand, within EX28DRAFT_1765at 1781.238 kb on + strand, within EX28DRAFT_1765at 1781.238 kb on + strand, within EX28DRAFT_1765at 1781.239 kb on - strand, within EX28DRAFT_1765at 1781.239 kb on - strand, within EX28DRAFT_1765at 1781.239 kb on - strand, within EX28DRAFT_1765at 1781.377 kb on + strandat 1781.441 kb on + strandat 1781.463 kb on + strandat 1781.464 kb on - strandat 1781.464 kb on - strandat 1781.467 kb on + strandat 1781.468 kb on - strandat 1781.468 kb on - strandat 1781.468 kb on - strandat 1781.468 kb on - strandat 1781.582 kb on - strand, within EX28DRAFT_1766at 1781.620 kb on + strand, within EX28DRAFT_1766at 1781.930 kb on - strand, within EX28DRAFT_1766at 1782.180 kb on - strandat 1782.196 kb on - strandat 1782.241 kb on + strandat 1782.241 kb on + strandat 1782.241 kb on + strandat 1782.242 kb on - strandat 1782.279 kb on + strandat 1782.376 kb on - strandat 1782.722 kb on - strand, within EX28DRAFT_1767at 1782.805 kb on + strand, within EX28DRAFT_1767at 1782.805 kb on + strand, within EX28DRAFT_1767at 1782.808 kb on + strand, within EX28DRAFT_1767at 1782.866 kb on - strand, within EX28DRAFT_1767at 1782.867 kb on + strand, within EX28DRAFT_1767at 1782.867 kb on + strand, within EX28DRAFT_1767at 1782.868 kb on - strand, within EX28DRAFT_1767at 1782.900 kb on + strand, within EX28DRAFT_1767at 1782.958 kb on + strand, within EX28DRAFT_1767at 1782.990 kb on + strand, within EX28DRAFT_1767at 1783.042 kb on - strand, within EX28DRAFT_1767

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,780,568 - EX28DRAFT_1765 0.19 +0.4
1,780,616 + EX28DRAFT_1765 0.24 -1.4
1,780,617 - EX28DRAFT_1765 0.24 -0.9
1,780,618 + EX28DRAFT_1765 0.24 -0.3
1,780,619 - EX28DRAFT_1765 0.24 +0.5
1,780,619 - EX28DRAFT_1765 0.24 -0.0
1,780,619 - EX28DRAFT_1765 0.24 -0.1
1,780,619 - EX28DRAFT_1765 0.24 -0.2
1,780,619 - EX28DRAFT_1765 0.24 -0.2
1,780,850 + EX28DRAFT_1765 0.46 +0.5
1,780,985 + EX28DRAFT_1765 0.59 -0.1
1,780,986 - EX28DRAFT_1765 0.59 +1.5
1,780,986 - EX28DRAFT_1765 0.59 +0.0
1,780,986 - EX28DRAFT_1765 0.59 -0.4
1,780,986 - EX28DRAFT_1765 0.59 -0.9
1,781,198 + EX28DRAFT_1765 0.80 +1.1
1,781,199 - EX28DRAFT_1765 0.80 -0.4
1,781,238 + EX28DRAFT_1765 0.84 -0.4
1,781,238 + EX28DRAFT_1765 0.84 -0.4
1,781,238 + EX28DRAFT_1765 0.84 -0.2
1,781,239 - EX28DRAFT_1765 0.84 -0.3
1,781,239 - EX28DRAFT_1765 0.84 -0.3
1,781,239 - EX28DRAFT_1765 0.84 -0.2
1,781,377 + +0.8
1,781,441 + +0.8
1,781,463 + +0.7
1,781,464 - +0.4
1,781,464 - -0.3
1,781,467 + -0.0
1,781,468 - +0.1
1,781,468 - +1.2
1,781,468 - -0.2
1,781,468 - -0.5
1,781,582 - EX28DRAFT_1766 0.10 -1.3
1,781,620 + EX28DRAFT_1766 0.17 -0.7
1,781,930 - EX28DRAFT_1766 0.73 -0.3
1,782,180 - -0.3
1,782,196 - +0.3
1,782,241 + +0.6
1,782,241 + +0.1
1,782,241 + +0.3
1,782,242 - +1.3
1,782,279 + -0.9
1,782,376 - +0.4
1,782,722 - EX28DRAFT_1767 0.26 +1.0
1,782,805 + EX28DRAFT_1767 0.30 -0.2
1,782,805 + EX28DRAFT_1767 0.30 -0.1
1,782,808 + EX28DRAFT_1767 0.30 +0.9
1,782,866 - EX28DRAFT_1767 0.33 +0.1
1,782,867 + EX28DRAFT_1767 0.34 +0.7
1,782,867 + EX28DRAFT_1767 0.34 +0.2
1,782,868 - EX28DRAFT_1767 0.34 +0.3
1,782,900 + EX28DRAFT_1767 0.35 +0.1
1,782,958 + EX28DRAFT_1767 0.38 -0.1
1,782,990 + EX28DRAFT_1767 0.40 +0.5
1,783,042 - EX28DRAFT_1767 0.43 +0.4

Or see this region's nucleotide sequence