Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1642 and EX28DRAFT_1643 overlap by 22 nucleotides EX28DRAFT_1643 and EX28DRAFT_1644 are separated by 80 nucleotides EX28DRAFT_1644 and EX28DRAFT_1645 are separated by 48 nucleotides EX28DRAFT_1645 and EX28DRAFT_1646 are separated by 149 nucleotides
EX28DRAFT_1642: EX28DRAFT_1642 - Predicted membrane protein, at 1,658,544 to 1,660,577
_1642
EX28DRAFT_1643: EX28DRAFT_1643 - Cu/Zn superoxide dismutase, at 1,660,556 to 1,661,074
_1643
EX28DRAFT_1644: EX28DRAFT_1644 - Predicted oxidoreductase, at 1,661,155 to 1,662,051
_1644
EX28DRAFT_1645: EX28DRAFT_1645 - Predicted Fe-S protein, at 1,662,100 to 1,662,339
_1645
EX28DRAFT_1646: EX28DRAFT_1646 - Predicted membrane-associated, metal-dependent hydrolase, at 1,662,489 to 1,664,114
_1646
Position (kb)
1661
1662
1663 Strain fitness (log2 ratio)
-2
-1
0
1 at 1660.194 kb on + strand, within EX28DRAFT_1642 at 1660.195 kb on - strand, within EX28DRAFT_1642 at 1660.372 kb on + strand, within EX28DRAFT_1642 at 1660.480 kb on + strand at 1660.481 kb on - strand at 1660.487 kb on + strand at 1660.487 kb on + strand at 1660.488 kb on - strand at 1660.490 kb on - strand at 1660.490 kb on - strand at 1660.490 kb on - strand at 1660.618 kb on + strand, within EX28DRAFT_1643 at 1660.619 kb on - strand, within EX28DRAFT_1643 at 1661.074 kb on + strand at 1661.075 kb on - strand at 1661.104 kb on + strand at 1661.110 kb on + strand at 1661.312 kb on + strand, within EX28DRAFT_1644 at 1661.312 kb on + strand, within EX28DRAFT_1644 at 1661.756 kb on + strand, within EX28DRAFT_1644 at 1661.889 kb on - strand, within EX28DRAFT_1644 at 1661.893 kb on - strand, within EX28DRAFT_1644 at 1661.967 kb on + strand at 1661.967 kb on + strand at 1661.968 kb on - strand at 1661.968 kb on - strand at 1661.968 kb on - strand at 1661.990 kb on + strand at 1661.991 kb on - strand at 1661.999 kb on - strand at 1662.036 kb on + strand at 1662.071 kb on + strand at 1662.071 kb on + strand at 1662.093 kb on + strand at 1662.403 kb on + strand at 1662.403 kb on + strand at 1662.403 kb on + strand at 1662.403 kb on + strand at 1662.403 kb on + strand at 1662.404 kb on - strand at 1662.404 kb on - strand at 1662.449 kb on + strand at 1662.652 kb on + strand, within EX28DRAFT_1646 at 1662.653 kb on - strand, within EX28DRAFT_1646 at 1662.686 kb on + strand, within EX28DRAFT_1646 at 1662.697 kb on - strand, within EX28DRAFT_1646 at 1662.722 kb on - strand, within EX28DRAFT_1646 at 1662.750 kb on + strand, within EX28DRAFT_1646 at 1662.750 kb on + strand, within EX28DRAFT_1646 at 1662.750 kb on + strand, within EX28DRAFT_1646 at 1662.751 kb on - strand, within EX28DRAFT_1646 at 1662.755 kb on + strand, within EX28DRAFT_1646 at 1662.755 kb on + strand, within EX28DRAFT_1646 at 1662.756 kb on - strand, within EX28DRAFT_1646 at 1662.756 kb on - strand, within EX28DRAFT_1646 at 1662.756 kb on - strand, within EX28DRAFT_1646 at 1662.756 kb on - strand, within EX28DRAFT_1646 at 1662.759 kb on + strand, within EX28DRAFT_1646 at 1662.759 kb on + strand, within EX28DRAFT_1646 at 1662.759 kb on + strand, within EX28DRAFT_1646 at 1662.760 kb on - strand, within EX28DRAFT_1646 at 1662.760 kb on - strand, within EX28DRAFT_1646 at 1662.760 kb on - strand, within EX28DRAFT_1646 at 1662.760 kb on - strand, within EX28DRAFT_1646 at 1662.766 kb on - strand, within EX28DRAFT_1646 at 1662.766 kb on - strand, within EX28DRAFT_1646 at 1663.005 kb on - strand, within EX28DRAFT_1646 at 1663.012 kb on - strand, within EX28DRAFT_1646
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,660,194 + EX28DRAFT_1642 0.81 +0.4 1,660,195 - EX28DRAFT_1642 0.81 -0.5 1,660,372 + EX28DRAFT_1642 0.90 +0.0 1,660,480 + +0.3 1,660,481 - -0.3 1,660,487 + -0.2 1,660,487 + +1.1 1,660,488 - -0.8 1,660,490 - -0.4 1,660,490 - -0.3 1,660,490 - -0.0 1,660,618 + EX28DRAFT_1643 0.12 +1.0 1,660,619 - EX28DRAFT_1643 0.12 -0.4 1,661,074 + -0.1 1,661,075 - -0.0 1,661,104 + +1.7 1,661,110 + +0.4 1,661,312 + EX28DRAFT_1644 0.18 -2.2 1,661,312 + EX28DRAFT_1644 0.18 -0.5 1,661,756 + EX28DRAFT_1644 0.67 -1.0 1,661,889 - EX28DRAFT_1644 0.82 -0.2 1,661,893 - EX28DRAFT_1644 0.82 -2.2 1,661,967 + -0.3 1,661,967 + +0.5 1,661,968 - -0.7 1,661,968 - +0.9 1,661,968 - -0.2 1,661,990 + -0.2 1,661,991 - -0.0 1,661,999 - +0.6 1,662,036 + -0.6 1,662,071 + +0.4 1,662,071 + +0.7 1,662,093 + +1.1 1,662,403 + -0.5 1,662,403 + +0.3 1,662,403 + -0.1 1,662,403 + -0.6 1,662,403 + +0.2 1,662,404 - +0.2 1,662,404 - -0.4 1,662,449 + +0.9 1,662,652 + EX28DRAFT_1646 0.10 -1.1 1,662,653 - EX28DRAFT_1646 0.10 -0.4 1,662,686 + EX28DRAFT_1646 0.12 -1.0 1,662,697 - EX28DRAFT_1646 0.13 +0.1 1,662,722 - EX28DRAFT_1646 0.14 -0.3 1,662,750 + EX28DRAFT_1646 0.16 -0.2 1,662,750 + EX28DRAFT_1646 0.16 -0.2 1,662,750 + EX28DRAFT_1646 0.16 +0.3 1,662,751 - EX28DRAFT_1646 0.16 -0.2 1,662,755 + EX28DRAFT_1646 0.16 +0.1 1,662,755 + EX28DRAFT_1646 0.16 +1.0 1,662,756 - EX28DRAFT_1646 0.16 -0.3 1,662,756 - EX28DRAFT_1646 0.16 +0.1 1,662,756 - EX28DRAFT_1646 0.16 -0.7 1,662,756 - EX28DRAFT_1646 0.16 +0.2 1,662,759 + EX28DRAFT_1646 0.17 -0.5 1,662,759 + EX28DRAFT_1646 0.17 -0.4 1,662,759 + EX28DRAFT_1646 0.17 -0.1 1,662,760 - EX28DRAFT_1646 0.17 +1.3 1,662,760 - EX28DRAFT_1646 0.17 -0.1 1,662,760 - EX28DRAFT_1646 0.17 +0.2 1,662,760 - EX28DRAFT_1646 0.17 -0.3 1,662,766 - EX28DRAFT_1646 0.17 -1.4 1,662,766 - EX28DRAFT_1646 0.17 -0.3 1,663,005 - EX28DRAFT_1646 0.32 +0.1 1,663,012 - EX28DRAFT_1646 0.32 -0.4
Or see this region's nucleotide sequence