Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1541

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1540 and EX28DRAFT_1541 are separated by 134 nucleotidesEX28DRAFT_1541 and EX28DRAFT_1542 are separated by 109 nucleotides EX28DRAFT_1540: EX28DRAFT_1540 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 1,555,366 to 1,556,118 _1540 EX28DRAFT_1541: EX28DRAFT_1541 - hypothetical protein, at 1,556,253 to 1,556,447 _1541 EX28DRAFT_1542: EX28DRAFT_1542 - Universal stress protein UspA and related nucleotide-binding proteins, at 1,556,557 to 1,557,507 _1542 Position (kb) 1556 1557Strain fitness (log2 ratio) -3 -2 -1 0 1at 1555.306 kb on + strandat 1555.310 kb on + strandat 1555.311 kb on - strandat 1555.311 kb on - strandat 1555.348 kb on + strandat 1555.386 kb on + strandat 1555.386 kb on + strandat 1555.417 kb on - strandat 1555.542 kb on + strand, within EX28DRAFT_1540at 1555.600 kb on + strand, within EX28DRAFT_1540at 1555.600 kb on + strand, within EX28DRAFT_1540at 1555.884 kb on + strand, within EX28DRAFT_1540at 1555.885 kb on - strand, within EX28DRAFT_1540at 1555.972 kb on + strand, within EX28DRAFT_1540at 1555.973 kb on - strand, within EX28DRAFT_1540at 1556.050 kb on - strandat 1556.054 kb on - strandat 1556.174 kb on + strandat 1556.208 kb on + strandat 1556.208 kb on + strandat 1556.209 kb on - strandat 1556.303 kb on + strand, within EX28DRAFT_1541at 1556.303 kb on + strand, within EX28DRAFT_1541at 1556.356 kb on - strand, within EX28DRAFT_1541at 1556.406 kb on - strand, within EX28DRAFT_1541at 1556.434 kb on + strandat 1556.503 kb on - strandat 1556.503 kb on - strandat 1556.505 kb on - strandat 1556.505 kb on - strandat 1556.506 kb on + strandat 1556.506 kb on + strandat 1556.507 kb on - strandat 1556.507 kb on - strandat 1556.524 kb on - strandat 1556.541 kb on + strandat 1556.542 kb on - strandat 1556.582 kb on + strandat 1556.586 kb on + strandat 1556.633 kb on - strandat 1556.633 kb on - strandat 1556.692 kb on + strand, within EX28DRAFT_1542at 1556.788 kb on + strand, within EX28DRAFT_1542at 1556.788 kb on + strand, within EX28DRAFT_1542at 1556.791 kb on + strand, within EX28DRAFT_1542at 1556.792 kb on - strand, within EX28DRAFT_1542at 1556.818 kb on - strand, within EX28DRAFT_1542at 1556.820 kb on + strand, within EX28DRAFT_1542at 1556.820 kb on + strand, within EX28DRAFT_1542at 1556.964 kb on + strand, within EX28DRAFT_1542at 1557.124 kb on - strand, within EX28DRAFT_1542

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,555,306 + +0.3
1,555,310 + -1.2
1,555,311 - +0.4
1,555,311 - +0.1
1,555,348 + -0.0
1,555,386 + +0.1
1,555,386 + -0.3
1,555,417 - +0.2
1,555,542 + EX28DRAFT_1540 0.23 +0.0
1,555,600 + EX28DRAFT_1540 0.31 -0.2
1,555,600 + EX28DRAFT_1540 0.31 +0.0
1,555,884 + EX28DRAFT_1540 0.69 -0.2
1,555,885 - EX28DRAFT_1540 0.69 -3.1
1,555,972 + EX28DRAFT_1540 0.80 +1.4
1,555,973 - EX28DRAFT_1540 0.81 -0.1
1,556,050 - -0.3
1,556,054 - +0.2
1,556,174 + +0.0
1,556,208 + +0.4
1,556,208 + -0.7
1,556,209 - -0.3
1,556,303 + EX28DRAFT_1541 0.26 +0.4
1,556,303 + EX28DRAFT_1541 0.26 +0.5
1,556,356 - EX28DRAFT_1541 0.53 +0.3
1,556,406 - EX28DRAFT_1541 0.78 +0.4
1,556,434 + -0.7
1,556,503 - -1.2
1,556,503 - -0.4
1,556,505 - -0.4
1,556,505 - -0.5
1,556,506 + -2.5
1,556,506 + -0.7
1,556,507 - -1.2
1,556,507 - -0.6
1,556,524 - -1.9
1,556,541 + -1.2
1,556,542 - +0.4
1,556,582 + -0.9
1,556,586 + -1.5
1,556,633 - -0.9
1,556,633 - -1.6
1,556,692 + EX28DRAFT_1542 0.14 -0.3
1,556,788 + EX28DRAFT_1542 0.24 -1.1
1,556,788 + EX28DRAFT_1542 0.24 -1.3
1,556,791 + EX28DRAFT_1542 0.25 -1.5
1,556,792 - EX28DRAFT_1542 0.25 -3.3
1,556,818 - EX28DRAFT_1542 0.27 -0.9
1,556,820 + EX28DRAFT_1542 0.28 -1.1
1,556,820 + EX28DRAFT_1542 0.28 -0.9
1,556,964 + EX28DRAFT_1542 0.43 -1.2
1,557,124 - EX28DRAFT_1542 0.60 -2.5

Or see this region's nucleotide sequence