Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1476 and EX28DRAFT_1477 are separated by 77 nucleotides EX28DRAFT_1477 and EX28DRAFT_1478 are separated by 701 nucleotides
EX28DRAFT_1476: EX28DRAFT_1476 - Predicted amidohydrolase, at 1,491,311 to 1,492,291
_1476
EX28DRAFT_1477: EX28DRAFT_1477 - Uncharacterized protein conserved in bacteria, at 1,492,369 to 1,492,686
_1477
EX28DRAFT_1478: EX28DRAFT_1478 - Pili and flagellar-assembly chaperone, PapD N-terminal domain, at 1,493,388 to 1,493,933
_1478
Position (kb)
1492
1493 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1491.595 kb on + strand, within EX28DRAFT_1476 at 1491.596 kb on - strand, within EX28DRAFT_1476 at 1491.624 kb on - strand, within EX28DRAFT_1476 at 1491.632 kb on + strand, within EX28DRAFT_1476 at 1491.632 kb on + strand, within EX28DRAFT_1476 at 1491.632 kb on + strand, within EX28DRAFT_1476 at 1491.632 kb on + strand, within EX28DRAFT_1476 at 1491.633 kb on - strand, within EX28DRAFT_1476 at 1491.643 kb on + strand, within EX28DRAFT_1476 at 1491.643 kb on + strand, within EX28DRAFT_1476 at 1491.716 kb on - strand, within EX28DRAFT_1476 at 1492.012 kb on - strand, within EX28DRAFT_1476 at 1492.089 kb on - strand, within EX28DRAFT_1476 at 1492.166 kb on - strand, within EX28DRAFT_1476 at 1492.209 kb on + strand at 1492.209 kb on + strand at 1492.210 kb on - strand at 1492.210 kb on - strand at 1492.210 kb on - strand at 1492.219 kb on - strand at 1492.319 kb on + strand at 1492.399 kb on - strand at 1492.578 kb on + strand, within EX28DRAFT_1477 at 1492.854 kb on + strand at 1492.862 kb on - strand at 1492.876 kb on - strand at 1492.879 kb on + strand at 1492.891 kb on + strand at 1492.892 kb on - strand at 1492.919 kb on + strand at 1492.923 kb on + strand at 1492.965 kb on - strand at 1492.990 kb on - strand at 1492.990 kb on - strand at 1492.990 kb on - strand at 1492.990 kb on - strand at 1492.993 kb on - strand at 1493.002 kb on + strand at 1493.003 kb on - strand at 1493.159 kb on - strand at 1493.679 kb on - strand, within EX28DRAFT_1478
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,491,595 + EX28DRAFT_1476 0.29 +0.4 1,491,596 - EX28DRAFT_1476 0.29 -0.5 1,491,624 - EX28DRAFT_1476 0.32 -0.9 1,491,632 + EX28DRAFT_1476 0.33 +0.2 1,491,632 + EX28DRAFT_1476 0.33 -0.3 1,491,632 + EX28DRAFT_1476 0.33 +1.1 1,491,632 + EX28DRAFT_1476 0.33 +1.4 1,491,633 - EX28DRAFT_1476 0.33 -1.4 1,491,643 + EX28DRAFT_1476 0.34 -0.2 1,491,643 + EX28DRAFT_1476 0.34 -0.8 1,491,716 - EX28DRAFT_1476 0.41 -1.3 1,492,012 - EX28DRAFT_1476 0.71 +0.4 1,492,089 - EX28DRAFT_1476 0.79 +1.2 1,492,166 - EX28DRAFT_1476 0.87 -0.2 1,492,209 + -1.0 1,492,209 + -0.0 1,492,210 - +0.8 1,492,210 - +0.2 1,492,210 - +0.4 1,492,219 - +1.9 1,492,319 + +0.1 1,492,399 - +0.3 1,492,578 + EX28DRAFT_1477 0.66 -0.8 1,492,854 + -0.1 1,492,862 - +0.3 1,492,876 - +0.5 1,492,879 + +1.8 1,492,891 + +1.0 1,492,892 - +0.1 1,492,919 + -1.6 1,492,923 + +0.2 1,492,965 - -0.7 1,492,990 - -0.3 1,492,990 - +0.1 1,492,990 - +0.8 1,492,990 - -0.4 1,492,993 - -0.6 1,493,002 + +1.2 1,493,003 - +0.6 1,493,159 - -2.3 1,493,679 - EX28DRAFT_1478 0.53 -0.4
Or see this region's nucleotide sequence