Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1441

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1439 and EX28DRAFT_1440 are separated by 125 nucleotidesEX28DRAFT_1440 and EX28DRAFT_1441 are separated by 101 nucleotidesEX28DRAFT_1441 and EX28DRAFT_1442 are separated by 378 nucleotides EX28DRAFT_1439: EX28DRAFT_1439 - Uncharacterized conserved protein, at 1,450,339 to 1,450,629 _1439 EX28DRAFT_1440: EX28DRAFT_1440 - Universal stress protein UspA and related nucleotide-binding proteins, at 1,450,755 to 1,451,189 _1440 EX28DRAFT_1441: EX28DRAFT_1441 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,451,291 to 1,453,873 _1441 EX28DRAFT_1442: EX28DRAFT_1442 - DNA-binding HTH domain-containing proteins, at 1,454,252 to 1,454,887 _1442 Position (kb) 1451 1452 1453 1454Strain fitness (log2 ratio) -1 0 1 2 3at 1450.293 kb on - strandat 1450.306 kb on + strandat 1450.364 kb on + strandat 1450.365 kb on - strandat 1450.365 kb on - strandat 1450.421 kb on + strand, within EX28DRAFT_1439at 1450.546 kb on + strand, within EX28DRAFT_1439at 1450.547 kb on - strand, within EX28DRAFT_1439at 1450.547 kb on - strand, within EX28DRAFT_1439at 1450.547 kb on - strand, within EX28DRAFT_1439at 1450.646 kb on + strandat 1450.646 kb on + strandat 1450.646 kb on + strandat 1450.647 kb on - strandat 1450.653 kb on - strandat 1450.653 kb on - strandat 1450.660 kb on - strandat 1450.758 kb on + strandat 1450.758 kb on + strandat 1450.758 kb on + strandat 1450.759 kb on - strandat 1450.759 kb on - strandat 1450.761 kb on - strandat 1450.761 kb on - strandat 1450.835 kb on + strand, within EX28DRAFT_1440at 1450.835 kb on + strand, within EX28DRAFT_1440at 1450.836 kb on - strand, within EX28DRAFT_1440at 1450.836 kb on - strand, within EX28DRAFT_1440at 1450.836 kb on - strand, within EX28DRAFT_1440at 1450.844 kb on + strand, within EX28DRAFT_1440at 1450.844 kb on + strand, within EX28DRAFT_1440at 1450.853 kb on + strand, within EX28DRAFT_1440at 1450.854 kb on - strand, within EX28DRAFT_1440at 1450.890 kb on + strand, within EX28DRAFT_1440at 1450.914 kb on + strand, within EX28DRAFT_1440at 1451.011 kb on + strand, within EX28DRAFT_1440at 1451.012 kb on - strand, within EX28DRAFT_1440at 1451.054 kb on + strand, within EX28DRAFT_1440at 1451.121 kb on + strand, within EX28DRAFT_1440at 1451.121 kb on + strand, within EX28DRAFT_1440at 1451.121 kb on + strand, within EX28DRAFT_1440at 1451.121 kb on + strand, within EX28DRAFT_1440at 1451.121 kb on + strand, within EX28DRAFT_1440at 1451.121 kb on + strand, within EX28DRAFT_1440at 1451.122 kb on - strand, within EX28DRAFT_1440at 1451.122 kb on - strand, within EX28DRAFT_1440at 1451.202 kb on - strandat 1451.213 kb on + strandat 1451.266 kb on - strandat 1451.292 kb on + strandat 1451.300 kb on + strandat 1451.301 kb on - strandat 1451.356 kb on - strandat 1451.506 kb on + strandat 1451.507 kb on - strandat 1451.512 kb on + strandat 1451.513 kb on - strandat 1451.530 kb on + strandat 1451.559 kb on + strand, within EX28DRAFT_1441at 1451.807 kb on - strand, within EX28DRAFT_1441at 1451.807 kb on - strand, within EX28DRAFT_1441at 1451.857 kb on + strand, within EX28DRAFT_1441at 1451.903 kb on + strand, within EX28DRAFT_1441at 1451.904 kb on - strand, within EX28DRAFT_1441at 1451.960 kb on - strand, within EX28DRAFT_1441at 1451.960 kb on - strand, within EX28DRAFT_1441at 1451.974 kb on + strand, within EX28DRAFT_1441at 1451.976 kb on + strand, within EX28DRAFT_1441at 1451.997 kb on + strand, within EX28DRAFT_1441at 1451.998 kb on - strand, within EX28DRAFT_1441at 1451.998 kb on - strand, within EX28DRAFT_1441at 1452.082 kb on - strand, within EX28DRAFT_1441at 1452.084 kb on + strand, within EX28DRAFT_1441at 1452.084 kb on + strand, within EX28DRAFT_1441at 1452.138 kb on + strand, within EX28DRAFT_1441at 1452.143 kb on + strand, within EX28DRAFT_1441at 1452.198 kb on - strand, within EX28DRAFT_1441at 1452.198 kb on - strand, within EX28DRAFT_1441at 1452.241 kb on + strand, within EX28DRAFT_1441at 1452.313 kb on + strand, within EX28DRAFT_1441at 1452.437 kb on - strand, within EX28DRAFT_1441at 1452.437 kb on - strand, within EX28DRAFT_1441at 1452.447 kb on - strand, within EX28DRAFT_1441at 1452.498 kb on - strand, within EX28DRAFT_1441at 1452.523 kb on + strand, within EX28DRAFT_1441at 1452.523 kb on + strand, within EX28DRAFT_1441at 1452.524 kb on - strand, within EX28DRAFT_1441at 1452.943 kb on + strand, within EX28DRAFT_1441at 1453.010 kb on - strand, within EX28DRAFT_1441at 1453.010 kb on - strand, within EX28DRAFT_1441at 1453.013 kb on - strand, within EX28DRAFT_1441at 1453.022 kb on + strand, within EX28DRAFT_1441at 1453.149 kb on - strand, within EX28DRAFT_1441at 1453.169 kb on - strand, within EX28DRAFT_1441at 1453.265 kb on + strand, within EX28DRAFT_1441at 1453.266 kb on - strand, within EX28DRAFT_1441at 1453.267 kb on + strand, within EX28DRAFT_1441at 1453.418 kb on + strand, within EX28DRAFT_1441at 1453.548 kb on + strand, within EX28DRAFT_1441at 1453.558 kb on + strand, within EX28DRAFT_1441at 1453.611 kb on + strand, within EX28DRAFT_1441at 1453.612 kb on - strand, within EX28DRAFT_1441at 1453.612 kb on - strand, within EX28DRAFT_1441at 1453.612 kb on - strand, within EX28DRAFT_1441at 1453.612 kb on - strand, within EX28DRAFT_1441at 1453.795 kb on + strandat 1453.886 kb on + strandat 1454.381 kb on + strand, within EX28DRAFT_1442at 1454.538 kb on + strand, within EX28DRAFT_1442at 1454.768 kb on - strand, within EX28DRAFT_1442at 1454.769 kb on + strand, within EX28DRAFT_1442at 1454.769 kb on + strand, within EX28DRAFT_1442at 1454.870 kb on - strandat 1454.873 kb on + strandat 1454.873 kb on + strandat 1454.873 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,450,293 - -0.5
1,450,306 + +0.5
1,450,364 + +1.3
1,450,365 - -1.5
1,450,365 - -0.2
1,450,421 + EX28DRAFT_1439 0.28 -0.9
1,450,546 + EX28DRAFT_1439 0.71 -0.5
1,450,547 - EX28DRAFT_1439 0.71 +2.4
1,450,547 - EX28DRAFT_1439 0.71 +1.0
1,450,547 - EX28DRAFT_1439 0.71 -0.1
1,450,646 + -0.1
1,450,646 + +0.1
1,450,646 + -1.4
1,450,647 - +0.3
1,450,653 - -1.2
1,450,653 - +0.4
1,450,660 - -0.1
1,450,758 + +1.2
1,450,758 + +0.4
1,450,758 + +0.5
1,450,759 - +0.5
1,450,759 - -1.2
1,450,761 - -0.0
1,450,761 - +0.4
1,450,835 + EX28DRAFT_1440 0.18 +0.0
1,450,835 + EX28DRAFT_1440 0.18 -1.3
1,450,836 - EX28DRAFT_1440 0.19 -0.2
1,450,836 - EX28DRAFT_1440 0.19 -0.1
1,450,836 - EX28DRAFT_1440 0.19 +0.4
1,450,844 + EX28DRAFT_1440 0.20 -0.2
1,450,844 + EX28DRAFT_1440 0.20 -1.4
1,450,853 + EX28DRAFT_1440 0.23 +0.9
1,450,854 - EX28DRAFT_1440 0.23 -0.9
1,450,890 + EX28DRAFT_1440 0.31 +0.8
1,450,914 + EX28DRAFT_1440 0.37 -0.3
1,451,011 + EX28DRAFT_1440 0.59 +0.8
1,451,012 - EX28DRAFT_1440 0.59 +0.4
1,451,054 + EX28DRAFT_1440 0.69 -0.6
1,451,121 + EX28DRAFT_1440 0.84 +0.0
1,451,121 + EX28DRAFT_1440 0.84 +0.4
1,451,121 + EX28DRAFT_1440 0.84 +0.0
1,451,121 + EX28DRAFT_1440 0.84 +0.1
1,451,121 + EX28DRAFT_1440 0.84 -1.1
1,451,121 + EX28DRAFT_1440 0.84 +0.4
1,451,122 - EX28DRAFT_1440 0.84 +0.3
1,451,122 - EX28DRAFT_1440 0.84 +3.1
1,451,202 - +1.4
1,451,213 + -0.3
1,451,266 - -0.1
1,451,292 + +1.1
1,451,300 + +0.4
1,451,301 - -0.5
1,451,356 - -1.2
1,451,506 + -0.6
1,451,507 - +0.6
1,451,512 + -0.4
1,451,513 - -0.3
1,451,530 + +0.0
1,451,559 + EX28DRAFT_1441 0.10 -0.5
1,451,807 - EX28DRAFT_1441 0.20 +0.4
1,451,807 - EX28DRAFT_1441 0.20 -0.5
1,451,857 + EX28DRAFT_1441 0.22 -0.8
1,451,903 + EX28DRAFT_1441 0.24 +0.2
1,451,904 - EX28DRAFT_1441 0.24 -1.0
1,451,960 - EX28DRAFT_1441 0.26 +0.0
1,451,960 - EX28DRAFT_1441 0.26 -0.2
1,451,974 + EX28DRAFT_1441 0.26 +2.4
1,451,976 + EX28DRAFT_1441 0.27 -0.1
1,451,997 + EX28DRAFT_1441 0.27 +1.5
1,451,998 - EX28DRAFT_1441 0.27 +0.0
1,451,998 - EX28DRAFT_1441 0.27 -1.6
1,452,082 - EX28DRAFT_1441 0.31 +1.4
1,452,084 + EX28DRAFT_1441 0.31 +0.1
1,452,084 + EX28DRAFT_1441 0.31 +0.4
1,452,138 + EX28DRAFT_1441 0.33 -0.2
1,452,143 + EX28DRAFT_1441 0.33 -0.7
1,452,198 - EX28DRAFT_1441 0.35 +0.4
1,452,198 - EX28DRAFT_1441 0.35 +1.4
1,452,241 + EX28DRAFT_1441 0.37 +0.3
1,452,313 + EX28DRAFT_1441 0.40 +0.2
1,452,437 - EX28DRAFT_1441 0.44 -0.4
1,452,437 - EX28DRAFT_1441 0.44 -0.3
1,452,447 - EX28DRAFT_1441 0.45 -0.2
1,452,498 - EX28DRAFT_1441 0.47 +0.1
1,452,523 + EX28DRAFT_1441 0.48 +0.6
1,452,523 + EX28DRAFT_1441 0.48 +0.2
1,452,524 - EX28DRAFT_1441 0.48 +0.1
1,452,943 + EX28DRAFT_1441 0.64 -0.8
1,453,010 - EX28DRAFT_1441 0.67 -0.9
1,453,010 - EX28DRAFT_1441 0.67 +0.0
1,453,013 - EX28DRAFT_1441 0.67 +0.0
1,453,022 + EX28DRAFT_1441 0.67 +0.7
1,453,149 - EX28DRAFT_1441 0.72 -0.6
1,453,169 - EX28DRAFT_1441 0.73 +0.1
1,453,265 + EX28DRAFT_1441 0.76 +0.3
1,453,266 - EX28DRAFT_1441 0.76 +1.6
1,453,267 + EX28DRAFT_1441 0.77 +0.1
1,453,418 + EX28DRAFT_1441 0.82 +0.1
1,453,548 + EX28DRAFT_1441 0.87 -0.1
1,453,558 + EX28DRAFT_1441 0.88 +0.2
1,453,611 + EX28DRAFT_1441 0.90 -1.2
1,453,612 - EX28DRAFT_1441 0.90 +1.3
1,453,612 - EX28DRAFT_1441 0.90 +0.5
1,453,612 - EX28DRAFT_1441 0.90 -0.7
1,453,612 - EX28DRAFT_1441 0.90 -0.2
1,453,795 + +0.3
1,453,886 + +1.1
1,454,381 + EX28DRAFT_1442 0.20 -0.1
1,454,538 + EX28DRAFT_1442 0.45 +0.1
1,454,768 - EX28DRAFT_1442 0.81 +0.6
1,454,769 + EX28DRAFT_1442 0.81 -0.2
1,454,769 + EX28DRAFT_1442 0.81 +1.1
1,454,870 - +0.0
1,454,873 + -0.1
1,454,873 + -1.3
1,454,873 + -0.7

Or see this region's nucleotide sequence