Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1429 and EX28DRAFT_1430 are separated by 0 nucleotides EX28DRAFT_1430 and EX28DRAFT_1431 are separated by 7 nucleotides EX28DRAFT_1431 and EX28DRAFT_1432 overlap by 4 nucleotides
EX28DRAFT_1429: EX28DRAFT_1429 - AraC-type DNA-binding domain-containing proteins, at 1,440,677 to 1,441,585
_1429
EX28DRAFT_1430: EX28DRAFT_1430 - Uncharacterized protein conserved in bacteria, at 1,441,586 to 1,441,903
_1430
EX28DRAFT_1431: EX28DRAFT_1431 - YnbE-like lipoprotein, at 1,441,911 to 1,442,102
_1431
EX28DRAFT_1432: EX28DRAFT_1432 - Dicarboxylate transport, at 1,442,099 to 1,444,738
_1432
Position (kb)
1441
1442 Strain fitness (log2 ratio)
-2
-1
0
1 at 1440.598 kb on - strand at 1440.598 kb on - strand at 1440.599 kb on + strand at 1440.600 kb on - strand at 1440.612 kb on - strand at 1440.612 kb on - strand at 1440.612 kb on - strand at 1440.612 kb on - strand at 1440.704 kb on + strand at 1440.727 kb on + strand at 1440.798 kb on - strand, within EX28DRAFT_1429 at 1440.877 kb on + strand, within EX28DRAFT_1429 at 1440.893 kb on + strand, within EX28DRAFT_1429 at 1440.893 kb on + strand, within EX28DRAFT_1429 at 1440.894 kb on - strand, within EX28DRAFT_1429 at 1440.967 kb on + strand, within EX28DRAFT_1429 at 1441.083 kb on + strand, within EX28DRAFT_1429 at 1441.084 kb on - strand, within EX28DRAFT_1429 at 1441.084 kb on - strand, within EX28DRAFT_1429 at 1441.351 kb on + strand, within EX28DRAFT_1429 at 1441.409 kb on + strand, within EX28DRAFT_1429 at 1441.587 kb on + strand at 1441.588 kb on - strand at 1441.623 kb on + strand, within EX28DRAFT_1430 at 1441.624 kb on - strand, within EX28DRAFT_1430 at 1441.717 kb on - strand, within EX28DRAFT_1430 at 1441.880 kb on + strand at 1441.892 kb on + strand at 1441.964 kb on + strand, within EX28DRAFT_1431 at 1441.964 kb on + strand, within EX28DRAFT_1431 at 1441.965 kb on - strand, within EX28DRAFT_1431 at 1441.965 kb on - strand, within EX28DRAFT_1431 at 1441.967 kb on + strand, within EX28DRAFT_1431 at 1441.968 kb on - strand, within EX28DRAFT_1431 at 1441.997 kb on + strand, within EX28DRAFT_1431 at 1441.997 kb on + strand, within EX28DRAFT_1431 at 1441.998 kb on - strand, within EX28DRAFT_1431 at 1441.998 kb on - strand, within EX28DRAFT_1431 at 1441.998 kb on - strand, within EX28DRAFT_1431 at 1442.233 kb on + strand at 1442.236 kb on - strand at 1442.303 kb on + strand at 1442.358 kb on + strand at 1442.359 kb on - strand at 1442.392 kb on + strand, within EX28DRAFT_1432 at 1442.393 kb on - strand, within EX28DRAFT_1432 at 1442.395 kb on + strand, within EX28DRAFT_1432 at 1442.473 kb on + strand, within EX28DRAFT_1432 at 1442.473 kb on + strand, within EX28DRAFT_1432 at 1442.581 kb on + strand, within EX28DRAFT_1432 at 1442.581 kb on + strand, within EX28DRAFT_1432 at 1442.581 kb on + strand, within EX28DRAFT_1432 at 1442.582 kb on - strand, within EX28DRAFT_1432 at 1442.582 kb on - strand, within EX28DRAFT_1432 at 1442.582 kb on - strand, within EX28DRAFT_1432 at 1442.582 kb on - strand, within EX28DRAFT_1432 at 1442.582 kb on - strand, within EX28DRAFT_1432 at 1442.707 kb on - strand, within EX28DRAFT_1432 at 1442.707 kb on - strand, within EX28DRAFT_1432 at 1442.766 kb on - strand, within EX28DRAFT_1432
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,440,598 - -0.4 1,440,598 - -0.0 1,440,599 + -0.2 1,440,600 - +0.6 1,440,612 - +0.9 1,440,612 - +0.3 1,440,612 - -0.1 1,440,612 - -0.3 1,440,704 + +0.3 1,440,727 + +0.1 1,440,798 - EX28DRAFT_1429 0.13 -0.6 1,440,877 + EX28DRAFT_1429 0.22 +1.1 1,440,893 + EX28DRAFT_1429 0.24 +1.3 1,440,893 + EX28DRAFT_1429 0.24 +0.2 1,440,894 - EX28DRAFT_1429 0.24 -0.4 1,440,967 + EX28DRAFT_1429 0.32 +0.1 1,441,083 + EX28DRAFT_1429 0.45 -0.6 1,441,084 - EX28DRAFT_1429 0.45 -0.2 1,441,084 - EX28DRAFT_1429 0.45 -1.4 1,441,351 + EX28DRAFT_1429 0.74 -0.1 1,441,409 + EX28DRAFT_1429 0.81 +0.1 1,441,587 + -0.4 1,441,588 - -0.1 1,441,623 + EX28DRAFT_1430 0.12 -2.5 1,441,624 - EX28DRAFT_1430 0.12 -0.3 1,441,717 - EX28DRAFT_1430 0.41 +0.1 1,441,880 + -0.5 1,441,892 + +0.5 1,441,964 + EX28DRAFT_1431 0.28 -0.2 1,441,964 + EX28DRAFT_1431 0.28 +0.3 1,441,965 - EX28DRAFT_1431 0.28 -0.4 1,441,965 - EX28DRAFT_1431 0.28 -0.1 1,441,967 + EX28DRAFT_1431 0.29 -0.8 1,441,968 - EX28DRAFT_1431 0.30 +0.4 1,441,997 + EX28DRAFT_1431 0.45 -1.4 1,441,997 + EX28DRAFT_1431 0.45 -0.7 1,441,998 - EX28DRAFT_1431 0.45 -0.4 1,441,998 - EX28DRAFT_1431 0.45 -0.1 1,441,998 - EX28DRAFT_1431 0.45 +0.3 1,442,233 + +0.3 1,442,236 - -0.8 1,442,303 + -1.2 1,442,358 + +0.2 1,442,359 - +0.2 1,442,392 + EX28DRAFT_1432 0.11 +0.0 1,442,393 - EX28DRAFT_1432 0.11 -0.8 1,442,395 + EX28DRAFT_1432 0.11 -0.5 1,442,473 + EX28DRAFT_1432 0.14 -0.0 1,442,473 + EX28DRAFT_1432 0.14 -0.2 1,442,581 + EX28DRAFT_1432 0.18 -0.5 1,442,581 + EX28DRAFT_1432 0.18 +0.5 1,442,581 + EX28DRAFT_1432 0.18 +0.5 1,442,582 - EX28DRAFT_1432 0.18 -0.2 1,442,582 - EX28DRAFT_1432 0.18 +0.3 1,442,582 - EX28DRAFT_1432 0.18 -0.8 1,442,582 - EX28DRAFT_1432 0.18 +0.1 1,442,582 - EX28DRAFT_1432 0.18 -0.3 1,442,707 - EX28DRAFT_1432 0.23 -0.4 1,442,707 - EX28DRAFT_1432 0.23 -0.6 1,442,766 - EX28DRAFT_1432 0.25 -0.5
Or see this region's nucleotide sequence