Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1381 and EX28DRAFT_1382 are separated by 51 nucleotides EX28DRAFT_1382 and EX28DRAFT_1383 are separated by 103 nucleotides EX28DRAFT_1383 and EX28DRAFT_1384 are separated by 39 nucleotides EX28DRAFT_1384 and EX28DRAFT_1385 are separated by 64 nucleotides
EX28DRAFT_1381: EX28DRAFT_1381 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,393,666 to 1,394,445
_1381
EX28DRAFT_1382: EX28DRAFT_1382 - transcriptional regulator, TetR family, at 1,394,497 to 1,395,075
_1382
EX28DRAFT_1383: EX28DRAFT_1383 - Uncharacterized protein conserved in bacteria, at 1,395,179 to 1,395,646
_1383
EX28DRAFT_1384: EX28DRAFT_1384 - Predicted ester cyclase, at 1,395,686 to 1,396,225
_1384
EX28DRAFT_1385: EX28DRAFT_1385 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,396,290 to 1,397,009
_1385
Position (kb)
1395
1396 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1394.275 kb on + strand, within EX28DRAFT_1381 at 1394.276 kb on - strand, within EX28DRAFT_1381 at 1394.578 kb on - strand, within EX28DRAFT_1382 at 1394.837 kb on - strand, within EX28DRAFT_1382 at 1395.027 kb on + strand at 1395.049 kb on - strand at 1395.123 kb on + strand at 1395.158 kb on + strand at 1395.161 kb on - strand at 1395.450 kb on - strand, within EX28DRAFT_1383 at 1395.556 kb on + strand, within EX28DRAFT_1383 at 1395.644 kb on + strand at 1395.839 kb on - strand, within EX28DRAFT_1384 at 1395.947 kb on - strand, within EX28DRAFT_1384 at 1396.115 kb on + strand, within EX28DRAFT_1384 at 1396.117 kb on + strand, within EX28DRAFT_1384 at 1396.188 kb on - strand at 1396.210 kb on - strand at 1396.217 kb on - strand at 1396.239 kb on - strand at 1396.243 kb on + strand at 1396.244 kb on - strand at 1396.246 kb on + strand at 1396.247 kb on - strand at 1396.247 kb on - strand at 1396.247 kb on - strand at 1396.316 kb on + strand at 1396.466 kb on - strand, within EX28DRAFT_1385
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,394,275 + EX28DRAFT_1381 0.78 -0.3 1,394,276 - EX28DRAFT_1381 0.78 +0.6 1,394,578 - EX28DRAFT_1382 0.14 -0.0 1,394,837 - EX28DRAFT_1382 0.59 -2.1 1,395,027 + -0.6 1,395,049 - +0.1 1,395,123 + -0.4 1,395,158 + -1.5 1,395,161 - +0.5 1,395,450 - EX28DRAFT_1383 0.58 -0.9 1,395,556 + EX28DRAFT_1383 0.81 -0.6 1,395,644 + -0.1 1,395,839 - EX28DRAFT_1384 0.28 -0.1 1,395,947 - EX28DRAFT_1384 0.48 -0.4 1,396,115 + EX28DRAFT_1384 0.79 +0.8 1,396,117 + EX28DRAFT_1384 0.80 -0.2 1,396,188 - -0.6 1,396,210 - +1.2 1,396,217 - +1.8 1,396,239 - -0.9 1,396,243 + -0.1 1,396,244 - -0.1 1,396,246 + +0.2 1,396,247 - -2.0 1,396,247 - -0.0 1,396,247 - +0.3 1,396,316 + -0.1 1,396,466 - EX28DRAFT_1385 0.24 +0.8
Or see this region's nucleotide sequence