Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1358

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1357 and EX28DRAFT_1358 are separated by 205 nucleotidesEX28DRAFT_1358 and EX28DRAFT_1359 are separated by 90 nucleotidesEX28DRAFT_1359 and EX28DRAFT_1360 are separated by 7 nucleotides EX28DRAFT_1357: EX28DRAFT_1357 - RNA helicase HrpA, at 1,372,805 to 1,376,707 _1357 EX28DRAFT_1358: EX28DRAFT_1358 - Acyl carrier protein phosphodiesterase, at 1,376,913 to 1,377,518 _1358 EX28DRAFT_1359: EX28DRAFT_1359 - Pseudouridylate synthases, 23S RNA-specific, at 1,377,609 to 1,378,295 _1359 EX28DRAFT_1360: EX28DRAFT_1360 - Uncharacterized protein conserved in bacteria, at 1,378,303 to 1,378,842 _1360 Position (kb) 1376 1377 1378Strain fitness (log2 ratio) -1 0 1at 1376.137 kb on - strand, within EX28DRAFT_1357at 1376.209 kb on + strand, within EX28DRAFT_1357at 1376.569 kb on - strandat 1376.708 kb on - strandat 1376.759 kb on - strandat 1376.761 kb on - strandat 1376.761 kb on - strandat 1376.820 kb on - strandat 1376.822 kb on - strandat 1376.822 kb on - strandat 1376.853 kb on - strandat 1376.924 kb on - strandat 1376.924 kb on - strandat 1376.926 kb on + strandat 1376.927 kb on - strandat 1376.983 kb on - strand, within EX28DRAFT_1358at 1377.201 kb on + strand, within EX28DRAFT_1358at 1377.202 kb on - strand, within EX28DRAFT_1358at 1377.202 kb on - strand, within EX28DRAFT_1358at 1377.234 kb on + strand, within EX28DRAFT_1358at 1377.235 kb on - strand, within EX28DRAFT_1358at 1377.322 kb on + strand, within EX28DRAFT_1358at 1377.621 kb on - strandat 1377.904 kb on - strand, within EX28DRAFT_1359at 1377.949 kb on + strand, within EX28DRAFT_1359at 1377.950 kb on - strand, within EX28DRAFT_1359at 1377.950 kb on - strand, within EX28DRAFT_1359at 1377.950 kb on - strand, within EX28DRAFT_1359at 1378.053 kb on + strand, within EX28DRAFT_1359at 1378.170 kb on + strand, within EX28DRAFT_1359at 1378.242 kb on - strandat 1378.440 kb on + strand, within EX28DRAFT_1360

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,376,137 - EX28DRAFT_1357 0.85 +0.6
1,376,209 + EX28DRAFT_1357 0.87 +0.2
1,376,569 - +0.4
1,376,708 - -0.5
1,376,759 - -0.1
1,376,761 - -0.0
1,376,761 - -0.0
1,376,820 - -0.5
1,376,822 - -0.3
1,376,822 - -0.7
1,376,853 - -0.7
1,376,924 - -0.1
1,376,924 - -0.0
1,376,926 + +0.1
1,376,927 - -0.3
1,376,983 - EX28DRAFT_1358 0.12 +0.5
1,377,201 + EX28DRAFT_1358 0.48 -0.8
1,377,202 - EX28DRAFT_1358 0.48 -0.2
1,377,202 - EX28DRAFT_1358 0.48 +0.3
1,377,234 + EX28DRAFT_1358 0.53 +0.8
1,377,235 - EX28DRAFT_1358 0.53 +0.4
1,377,322 + EX28DRAFT_1358 0.67 +1.3
1,377,621 - -0.3
1,377,904 - EX28DRAFT_1359 0.43 -0.3
1,377,949 + EX28DRAFT_1359 0.49 +0.3
1,377,950 - EX28DRAFT_1359 0.50 +0.9
1,377,950 - EX28DRAFT_1359 0.50 +0.8
1,377,950 - EX28DRAFT_1359 0.50 +0.6
1,378,053 + EX28DRAFT_1359 0.65 -0.1
1,378,170 + EX28DRAFT_1359 0.82 +0.2
1,378,242 - -0.2
1,378,440 + EX28DRAFT_1360 0.25 -1.1

Or see this region's nucleotide sequence