Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1329 and EX28DRAFT_1330 are separated by 117 nucleotides EX28DRAFT_1330 and EX28DRAFT_1331 are separated by 20 nucleotides EX28DRAFT_1331 and EX28DRAFT_1332 are separated by 180 nucleotides EX28DRAFT_1332 and EX28DRAFT_1333 are separated by 62 nucleotides
EX28DRAFT_1329: EX28DRAFT_1329 - Site-specific recombinase XerD, at 1,325,096 to 1,326,376
_1329
EX28DRAFT_1330: EX28DRAFT_1330 - hypothetical protein, at 1,326,494 to 1,326,688
_1330
EX28DRAFT_1331: EX28DRAFT_1331 - hypothetical protein, at 1,326,709 to 1,327,116
_1331
EX28DRAFT_1332: EX28DRAFT_1332 - Phage minor tail protein, at 1,327,297 to 1,327,511
_1332
EX28DRAFT_1333: EX28DRAFT_1333 - hypothetical protein, at 1,327,574 to 1,327,998
_1333
Position (kb)
1326
1327
1328 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1325.910 kb on + strand, within EX28DRAFT_1329 at 1325.911 kb on - strand, within EX28DRAFT_1329 at 1325.954 kb on + strand, within EX28DRAFT_1329 at 1325.954 kb on + strand, within EX28DRAFT_1329 at 1325.954 kb on + strand, within EX28DRAFT_1329 at 1325.955 kb on - strand, within EX28DRAFT_1329 at 1325.955 kb on - strand, within EX28DRAFT_1329 at 1325.955 kb on - strand, within EX28DRAFT_1329 at 1326.081 kb on - strand, within EX28DRAFT_1329 at 1326.173 kb on + strand, within EX28DRAFT_1329 at 1326.173 kb on + strand, within EX28DRAFT_1329 at 1326.174 kb on - strand, within EX28DRAFT_1329 at 1326.174 kb on - strand, within EX28DRAFT_1329 at 1326.309 kb on + strand at 1326.441 kb on - strand at 1326.441 kb on - strand at 1326.441 kb on - strand at 1326.452 kb on - strand at 1326.458 kb on + strand at 1326.463 kb on - strand at 1326.463 kb on - strand at 1326.477 kb on + strand at 1326.497 kb on + strand at 1326.497 kb on + strand at 1326.497 kb on + strand at 1326.497 kb on + strand at 1326.498 kb on - strand at 1326.498 kb on - strand at 1326.539 kb on - strand, within EX28DRAFT_1330 at 1326.564 kb on + strand, within EX28DRAFT_1330 at 1326.651 kb on - strand, within EX28DRAFT_1330 at 1326.694 kb on - strand at 1326.695 kb on + strand at 1326.707 kb on + strand at 1326.765 kb on - strand, within EX28DRAFT_1331 at 1326.910 kb on - strand, within EX28DRAFT_1331 at 1326.916 kb on - strand, within EX28DRAFT_1331 at 1326.936 kb on + strand, within EX28DRAFT_1331 at 1326.974 kb on - strand, within EX28DRAFT_1331 at 1327.022 kb on + strand, within EX28DRAFT_1331 at 1327.024 kb on + strand, within EX28DRAFT_1331 at 1327.025 kb on - strand, within EX28DRAFT_1331 at 1327.083 kb on + strand at 1327.137 kb on + strand at 1327.151 kb on + strand at 1327.211 kb on + strand at 1327.212 kb on - strand at 1327.213 kb on + strand at 1327.214 kb on - strand at 1327.274 kb on + strand at 1327.275 kb on - strand at 1327.281 kb on + strand at 1327.282 kb on - strand at 1327.443 kb on + strand, within EX28DRAFT_1332 at 1327.444 kb on - strand, within EX28DRAFT_1332 at 1327.447 kb on + strand, within EX28DRAFT_1332 at 1327.451 kb on + strand, within EX28DRAFT_1332 at 1327.494 kb on - strand at 1327.597 kb on + strand at 1327.615 kb on + strand at 1327.615 kb on + strand at 1327.726 kb on + strand, within EX28DRAFT_1333 at 1327.726 kb on + strand, within EX28DRAFT_1333 at 1327.748 kb on - strand, within EX28DRAFT_1333 at 1327.748 kb on - strand, within EX28DRAFT_1333 at 1327.748 kb on - strand, within EX28DRAFT_1333 at 1327.848 kb on - strand, within EX28DRAFT_1333 at 1327.848 kb on - strand, within EX28DRAFT_1333 at 1327.861 kb on - strand, within EX28DRAFT_1333 at 1327.912 kb on - strand, within EX28DRAFT_1333 at 1327.949 kb on - strand, within EX28DRAFT_1333 at 1327.949 kb on - strand, within EX28DRAFT_1333 at 1328.094 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,325,910 + EX28DRAFT_1329 0.64 +0.8 1,325,911 - EX28DRAFT_1329 0.64 +0.3 1,325,954 + EX28DRAFT_1329 0.67 +0.2 1,325,954 + EX28DRAFT_1329 0.67 -1.5 1,325,954 + EX28DRAFT_1329 0.67 -0.2 1,325,955 - EX28DRAFT_1329 0.67 +0.2 1,325,955 - EX28DRAFT_1329 0.67 +0.5 1,325,955 - EX28DRAFT_1329 0.67 -0.1 1,326,081 - EX28DRAFT_1329 0.77 +0.5 1,326,173 + EX28DRAFT_1329 0.84 -0.5 1,326,173 + EX28DRAFT_1329 0.84 +0.8 1,326,174 - EX28DRAFT_1329 0.84 -0.4 1,326,174 - EX28DRAFT_1329 0.84 +0.0 1,326,309 + -0.7 1,326,441 - +0.8 1,326,441 - -1.0 1,326,441 - +0.8 1,326,452 - -0.3 1,326,458 + +0.1 1,326,463 - -1.0 1,326,463 - -0.4 1,326,477 + -0.5 1,326,497 + -0.1 1,326,497 + -0.2 1,326,497 + -0.2 1,326,497 + -0.1 1,326,498 - -2.2 1,326,498 - -2.0 1,326,539 - EX28DRAFT_1330 0.23 -0.8 1,326,564 + EX28DRAFT_1330 0.36 -1.1 1,326,651 - EX28DRAFT_1330 0.81 +1.1 1,326,694 - -0.6 1,326,695 + -0.2 1,326,707 + +0.1 1,326,765 - EX28DRAFT_1331 0.14 -0.6 1,326,910 - EX28DRAFT_1331 0.49 -1.9 1,326,916 - EX28DRAFT_1331 0.51 +0.4 1,326,936 + EX28DRAFT_1331 0.56 +0.8 1,326,974 - EX28DRAFT_1331 0.65 +0.9 1,327,022 + EX28DRAFT_1331 0.77 +0.7 1,327,024 + EX28DRAFT_1331 0.77 +0.9 1,327,025 - EX28DRAFT_1331 0.77 -0.1 1,327,083 + -1.2 1,327,137 + -0.9 1,327,151 + +0.5 1,327,211 + +1.8 1,327,212 - -1.4 1,327,213 + +0.2 1,327,214 - -0.2 1,327,274 + +1.0 1,327,275 - +0.7 1,327,281 + +0.5 1,327,282 - +2.6 1,327,443 + EX28DRAFT_1332 0.68 -0.5 1,327,444 - EX28DRAFT_1332 0.68 +0.2 1,327,447 + EX28DRAFT_1332 0.70 +0.3 1,327,451 + EX28DRAFT_1332 0.72 +0.1 1,327,494 - -1.6 1,327,597 + -0.6 1,327,615 + +0.3 1,327,615 + -0.4 1,327,726 + EX28DRAFT_1333 0.36 +1.1 1,327,726 + EX28DRAFT_1333 0.36 -1.1 1,327,748 - EX28DRAFT_1333 0.41 -1.3 1,327,748 - EX28DRAFT_1333 0.41 -0.4 1,327,748 - EX28DRAFT_1333 0.41 +0.6 1,327,848 - EX28DRAFT_1333 0.64 -0.6 1,327,848 - EX28DRAFT_1333 0.64 -0.1 1,327,861 - EX28DRAFT_1333 0.68 -0.4 1,327,912 - EX28DRAFT_1333 0.80 +1.5 1,327,949 - EX28DRAFT_1333 0.88 +0.2 1,327,949 - EX28DRAFT_1333 0.88 -0.5 1,328,094 + -0.3
Or see this region's nucleotide sequence