Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1313 and EX28DRAFT_1314 are separated by 109 nucleotides EX28DRAFT_1314 and EX28DRAFT_1315 are separated by 31 nucleotides EX28DRAFT_1315 and EX28DRAFT_1316 are separated by 475 nucleotides
EX28DRAFT_1313: EX28DRAFT_1313 - Cro, at 1,317,129 to 1,317,329
_1313
EX28DRAFT_1314: EX28DRAFT_1314 - SOS-response transcriptional repressors (RecA-mediated autopeptidases), at 1,317,439 to 1,318,155
_1314
EX28DRAFT_1315: EX28DRAFT_1315 - hypothetical protein, at 1,318,187 to 1,318,573
_1315
EX28DRAFT_1316: EX28DRAFT_1316 - hypothetical protein, at 1,319,049 to 1,319,327
_1316
Position (kb)
1318
1319 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1317.307 kb on + strand, within EX28DRAFT_1313 at 1317.368 kb on + strand at 1318.165 kb on - strand at 1318.271 kb on + strand, within EX28DRAFT_1315 at 1318.272 kb on - strand, within EX28DRAFT_1315 at 1318.272 kb on - strand, within EX28DRAFT_1315 at 1318.289 kb on + strand, within EX28DRAFT_1315 at 1318.330 kb on + strand, within EX28DRAFT_1315 at 1318.352 kb on - strand, within EX28DRAFT_1315 at 1318.358 kb on - strand, within EX28DRAFT_1315 at 1318.396 kb on - strand, within EX28DRAFT_1315 at 1318.400 kb on + strand, within EX28DRAFT_1315 at 1318.400 kb on + strand, within EX28DRAFT_1315 at 1318.400 kb on + strand, within EX28DRAFT_1315 at 1318.400 kb on + strand, within EX28DRAFT_1315 at 1318.401 kb on - strand, within EX28DRAFT_1315 at 1318.401 kb on - strand, within EX28DRAFT_1315 at 1318.401 kb on - strand, within EX28DRAFT_1315 at 1318.401 kb on - strand, within EX28DRAFT_1315 at 1318.485 kb on + strand, within EX28DRAFT_1315 at 1318.485 kb on + strand, within EX28DRAFT_1315 at 1318.485 kb on + strand, within EX28DRAFT_1315 at 1318.485 kb on + strand, within EX28DRAFT_1315 at 1318.559 kb on + strand at 1318.560 kb on - strand at 1318.562 kb on - strand at 1318.562 kb on - strand at 1318.562 kb on - strand at 1318.566 kb on - strand at 1318.608 kb on + strand at 1318.609 kb on - strand at 1318.743 kb on + strand at 1318.744 kb on - strand at 1318.869 kb on + strand at 1318.919 kb on - strand at 1318.931 kb on - strand at 1318.971 kb on - strand at 1319.035 kb on + strand at 1319.114 kb on + strand, within EX28DRAFT_1316 at 1319.115 kb on - strand, within EX28DRAFT_1316 at 1319.115 kb on - strand, within EX28DRAFT_1316 at 1319.182 kb on + strand, within EX28DRAFT_1316 at 1319.183 kb on - strand, within EX28DRAFT_1316 at 1319.227 kb on - strand, within EX28DRAFT_1316 at 1319.239 kb on + strand, within EX28DRAFT_1316 at 1319.239 kb on + strand, within EX28DRAFT_1316 at 1319.275 kb on + strand, within EX28DRAFT_1316 at 1319.275 kb on + strand, within EX28DRAFT_1316 at 1319.318 kb on - strand at 1319.364 kb on + strand at 1319.417 kb on + strand at 1319.418 kb on - strand at 1319.509 kb on - strand at 1319.569 kb on + strand at 1319.569 kb on + strand at 1319.570 kb on - strand at 1319.570 kb on - strand at 1319.570 kb on - strand at 1319.570 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,317,307 + EX28DRAFT_1313 0.89 -0.0 1,317,368 + +1.9 1,318,165 - -0.0 1,318,271 + EX28DRAFT_1315 0.22 -0.5 1,318,272 - EX28DRAFT_1315 0.22 -1.0 1,318,272 - EX28DRAFT_1315 0.22 +1.4 1,318,289 + EX28DRAFT_1315 0.26 -0.2 1,318,330 + EX28DRAFT_1315 0.37 -1.0 1,318,352 - EX28DRAFT_1315 0.43 +0.1 1,318,358 - EX28DRAFT_1315 0.44 -1.6 1,318,396 - EX28DRAFT_1315 0.54 -0.0 1,318,400 + EX28DRAFT_1315 0.55 -0.5 1,318,400 + EX28DRAFT_1315 0.55 -0.3 1,318,400 + EX28DRAFT_1315 0.55 +1.0 1,318,400 + EX28DRAFT_1315 0.55 -3.3 1,318,401 - EX28DRAFT_1315 0.55 +0.8 1,318,401 - EX28DRAFT_1315 0.55 +0.5 1,318,401 - EX28DRAFT_1315 0.55 +0.1 1,318,401 - EX28DRAFT_1315 0.55 -0.7 1,318,485 + EX28DRAFT_1315 0.77 -0.5 1,318,485 + EX28DRAFT_1315 0.77 -0.3 1,318,485 + EX28DRAFT_1315 0.77 +0.1 1,318,485 + EX28DRAFT_1315 0.77 -1.6 1,318,559 + -0.9 1,318,560 - -0.3 1,318,562 - +1.0 1,318,562 - -0.5 1,318,562 - -2.4 1,318,566 - +0.4 1,318,608 + -0.6 1,318,609 - -0.2 1,318,743 + -0.3 1,318,744 - -0.4 1,318,869 + -0.5 1,318,919 - -2.6 1,318,931 - +0.5 1,318,971 - +1.0 1,319,035 + +2.0 1,319,114 + EX28DRAFT_1316 0.23 +0.1 1,319,115 - EX28DRAFT_1316 0.24 -1.2 1,319,115 - EX28DRAFT_1316 0.24 +0.0 1,319,182 + EX28DRAFT_1316 0.48 +1.2 1,319,183 - EX28DRAFT_1316 0.48 +0.3 1,319,227 - EX28DRAFT_1316 0.64 -1.7 1,319,239 + EX28DRAFT_1316 0.68 -2.9 1,319,239 + EX28DRAFT_1316 0.68 -0.2 1,319,275 + EX28DRAFT_1316 0.81 -0.1 1,319,275 + EX28DRAFT_1316 0.81 -2.1 1,319,318 - -0.3 1,319,364 + +0.8 1,319,417 + +0.1 1,319,418 - +0.5 1,319,509 - -0.2 1,319,569 + +1.1 1,319,569 + +0.4 1,319,570 - -0.9 1,319,570 - -0.1 1,319,570 - -1.3 1,319,570 - +0.2
Or see this region's nucleotide sequence