Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1299 and EX28DRAFT_1300 overlap by 4 nucleotides EX28DRAFT_1300 and EX28DRAFT_1301 overlap by 4 nucleotides EX28DRAFT_1301 and EX28DRAFT_1302 overlap by 4 nucleotides EX28DRAFT_1302 and EX28DRAFT_1303 overlap by 8 nucleotides EX28DRAFT_1303 and EX28DRAFT_1304 overlap by 8 nucleotides EX28DRAFT_1304 and EX28DRAFT_1305 are separated by 260 nucleotides
EX28DRAFT_1299: EX28DRAFT_1299 - Phage antitermination protein Q, at 1,309,434 to 1,310,123
_1299
EX28DRAFT_1300: EX28DRAFT_1300 - hypothetical protein, at 1,310,120 to 1,310,260
_1300
EX28DRAFT_1301: EX28DRAFT_1301 - hypothetical protein, at 1,310,257 to 1,310,481
_1301
EX28DRAFT_1302: EX28DRAFT_1302 - Bacteriophage Lambda NinG protein, at 1,310,478 to 1,311,089
_1302
EX28DRAFT_1303: EX28DRAFT_1303 - hypothetical protein, at 1,311,082 to 1,311,252
_1303
EX28DRAFT_1304: EX28DRAFT_1304 - NinB protein, at 1,311,245 to 1,311,694
_1304
EX28DRAFT_1305: EX28DRAFT_1305 - hypothetical protein, at 1,311,955 to 1,312,755
_1305
Position (kb)
1311
1312 Strain fitness (log2 ratio)
-2
-1
0
1 at 1310.101 kb on + strand at 1310.146 kb on - strand, within EX28DRAFT_1300 at 1310.238 kb on - strand, within EX28DRAFT_1300 at 1310.285 kb on + strand, within EX28DRAFT_1301 at 1310.286 kb on - strand, within EX28DRAFT_1301 at 1310.286 kb on - strand, within EX28DRAFT_1301 at 1310.286 kb on - strand, within EX28DRAFT_1301 at 1310.294 kb on + strand, within EX28DRAFT_1301 at 1310.400 kb on + strand, within EX28DRAFT_1301 at 1310.461 kb on + strand at 1310.462 kb on - strand at 1310.462 kb on - strand at 1310.465 kb on + strand at 1310.466 kb on - strand at 1310.466 kb on - strand at 1310.475 kb on + strand at 1310.632 kb on + strand, within EX28DRAFT_1302 at 1310.687 kb on + strand, within EX28DRAFT_1302 at 1310.688 kb on - strand, within EX28DRAFT_1302 at 1310.699 kb on + strand, within EX28DRAFT_1302 at 1310.781 kb on - strand, within EX28DRAFT_1302 at 1310.781 kb on - strand, within EX28DRAFT_1302 at 1311.046 kb on + strand at 1311.069 kb on - strand at 1311.084 kb on - strand at 1311.144 kb on - strand, within EX28DRAFT_1303 at 1311.186 kb on + strand, within EX28DRAFT_1303 at 1311.246 kb on + strand at 1311.336 kb on + strand, within EX28DRAFT_1304 at 1311.379 kb on + strand, within EX28DRAFT_1304 at 1311.498 kb on + strand, within EX28DRAFT_1304 at 1311.502 kb on + strand, within EX28DRAFT_1304 at 1311.502 kb on + strand, within EX28DRAFT_1304 at 1311.517 kb on + strand, within EX28DRAFT_1304 at 1311.539 kb on - strand, within EX28DRAFT_1304 at 1311.539 kb on - strand, within EX28DRAFT_1304 at 1311.602 kb on + strand, within EX28DRAFT_1304 at 1311.647 kb on - strand, within EX28DRAFT_1304 at 1311.789 kb on - strand at 1311.846 kb on - strand at 1312.029 kb on - strand at 1312.071 kb on + strand, within EX28DRAFT_1305 at 1312.115 kb on + strand, within EX28DRAFT_1305 at 1312.143 kb on + strand, within EX28DRAFT_1305
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,310,101 + -0.7 1,310,146 - EX28DRAFT_1300 0.18 -1.5 1,310,238 - EX28DRAFT_1300 0.84 -0.4 1,310,285 + EX28DRAFT_1301 0.12 -0.4 1,310,286 - EX28DRAFT_1301 0.13 +0.1 1,310,286 - EX28DRAFT_1301 0.13 -0.6 1,310,286 - EX28DRAFT_1301 0.13 +0.2 1,310,294 + EX28DRAFT_1301 0.16 -0.4 1,310,400 + EX28DRAFT_1301 0.64 -1.6 1,310,461 + -0.1 1,310,462 - -0.1 1,310,462 - +1.0 1,310,465 + +0.3 1,310,466 - -0.3 1,310,466 - -0.5 1,310,475 + -0.8 1,310,632 + EX28DRAFT_1302 0.25 +0.7 1,310,687 + EX28DRAFT_1302 0.34 +0.3 1,310,688 - EX28DRAFT_1302 0.34 -0.1 1,310,699 + EX28DRAFT_1302 0.36 -0.4 1,310,781 - EX28DRAFT_1302 0.50 +0.3 1,310,781 - EX28DRAFT_1302 0.50 -1.1 1,311,046 + +0.4 1,311,069 - +1.0 1,311,084 - -1.7 1,311,144 - EX28DRAFT_1303 0.36 +0.0 1,311,186 + EX28DRAFT_1303 0.61 +1.6 1,311,246 + +0.2 1,311,336 + EX28DRAFT_1304 0.20 +0.1 1,311,379 + EX28DRAFT_1304 0.30 -2.3 1,311,498 + EX28DRAFT_1304 0.56 -1.8 1,311,502 + EX28DRAFT_1304 0.57 -0.1 1,311,502 + EX28DRAFT_1304 0.57 -0.6 1,311,517 + EX28DRAFT_1304 0.60 +0.1 1,311,539 - EX28DRAFT_1304 0.65 +0.1 1,311,539 - EX28DRAFT_1304 0.65 +0.6 1,311,602 + EX28DRAFT_1304 0.79 +0.2 1,311,647 - EX28DRAFT_1304 0.89 +0.2 1,311,789 - -0.1 1,311,846 - -1.2 1,312,029 - -0.1 1,312,071 + EX28DRAFT_1305 0.14 +0.2 1,312,115 + EX28DRAFT_1305 0.20 -0.2 1,312,143 + EX28DRAFT_1305 0.23 -1.6
Or see this region's nucleotide sequence