Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1290 and EX28DRAFT_1291 overlap by 1 nucleotides EX28DRAFT_1291 and EX28DRAFT_1292 are separated by 27 nucleotides EX28DRAFT_1292 and EX28DRAFT_1293 are separated by 59 nucleotides EX28DRAFT_1293 and EX28DRAFT_1294 are separated by 180 nucleotides EX28DRAFT_1294 and EX28DRAFT_1295 are separated by 28 nucleotides EX28DRAFT_1295 and EX28DRAFT_1296 overlap by 4 nucleotides
EX28DRAFT_1290: EX28DRAFT_1290 - hypothetical protein, at 1,304,794 to 1,306,266
_1290
EX28DRAFT_1291: EX28DRAFT_1291 - Terminase small subunit, at 1,306,266 to 1,306,781
_1291
EX28DRAFT_1292: EX28DRAFT_1292 - hypothetical protein, at 1,306,809 to 1,307,144
_1292
EX28DRAFT_1293: EX28DRAFT_1293 - hypothetical protein, at 1,307,204 to 1,307,413
_1293
EX28DRAFT_1294: EX28DRAFT_1294 - hypothetical protein, at 1,307,594 to 1,307,740
_1294
EX28DRAFT_1295: EX28DRAFT_1295 - Protein of unknown function (DUF2570), at 1,307,769 to 1,308,155
_1295
EX28DRAFT_1296: EX28DRAFT_1296 - Phage-related lysozyme (muraminidase), at 1,308,152 to 1,308,592
_1296
Position (kb)
1307
1308 Strain fitness (log2 ratio)
-2
-1
0
1 at 1306.365 kb on - strand, within EX28DRAFT_1291 at 1306.579 kb on + strand, within EX28DRAFT_1291 at 1306.579 kb on + strand, within EX28DRAFT_1291 at 1306.580 kb on - strand, within EX28DRAFT_1291 at 1306.795 kb on + strand at 1306.806 kb on + strand at 1306.806 kb on + strand at 1306.806 kb on + strand at 1306.806 kb on + strand at 1306.806 kb on + strand at 1306.807 kb on - strand at 1306.807 kb on - strand at 1306.807 kb on - strand at 1306.808 kb on + strand at 1306.808 kb on + strand at 1306.808 kb on + strand at 1306.809 kb on - strand at 1306.815 kb on - strand at 1306.840 kb on + strand at 1306.840 kb on + strand at 1306.904 kb on + strand, within EX28DRAFT_1292 at 1306.912 kb on - strand, within EX28DRAFT_1292 at 1307.061 kb on + strand, within EX28DRAFT_1292 at 1307.061 kb on + strand, within EX28DRAFT_1292 at 1307.062 kb on - strand, within EX28DRAFT_1292 at 1307.065 kb on - strand, within EX28DRAFT_1292 at 1307.077 kb on + strand, within EX28DRAFT_1292 at 1307.078 kb on - strand, within EX28DRAFT_1292 at 1307.109 kb on + strand, within EX28DRAFT_1292 at 1307.109 kb on + strand, within EX28DRAFT_1292 at 1307.109 kb on + strand, within EX28DRAFT_1292 at 1307.109 kb on + strand, within EX28DRAFT_1292 at 1307.110 kb on - strand, within EX28DRAFT_1292 at 1307.110 kb on - strand, within EX28DRAFT_1292 at 1307.179 kb on - strand at 1307.284 kb on - strand, within EX28DRAFT_1293 at 1307.425 kb on + strand at 1307.474 kb on - strand at 1307.477 kb on + strand at 1307.478 kb on - strand at 1307.490 kb on - strand at 1307.520 kb on + strand at 1307.520 kb on + strand at 1307.521 kb on - strand at 1307.522 kb on + strand at 1307.530 kb on + strand at 1307.530 kb on + strand at 1307.531 kb on - strand at 1307.531 kb on - strand at 1307.531 kb on - strand at 1307.570 kb on - strand at 1307.598 kb on + strand at 1307.598 kb on + strand at 1307.599 kb on - strand at 1307.642 kb on - strand, within EX28DRAFT_1294 at 1307.648 kb on - strand, within EX28DRAFT_1294 at 1307.688 kb on + strand, within EX28DRAFT_1294 at 1307.688 kb on + strand, within EX28DRAFT_1294 at 1307.783 kb on + strand at 1307.803 kb on - strand at 1307.803 kb on - strand at 1307.803 kb on - strand at 1307.803 kb on - strand at 1307.803 kb on - strand at 1307.815 kb on + strand, within EX28DRAFT_1295 at 1307.894 kb on - strand, within EX28DRAFT_1295 at 1308.131 kb on - strand at 1308.258 kb on + strand, within EX28DRAFT_1296 at 1308.259 kb on - strand, within EX28DRAFT_1296 at 1308.320 kb on - strand, within EX28DRAFT_1296 at 1308.321 kb on + strand, within EX28DRAFT_1296 at 1308.321 kb on + strand, within EX28DRAFT_1296 at 1308.321 kb on + strand, within EX28DRAFT_1296 at 1308.322 kb on - strand, within EX28DRAFT_1296 at 1308.322 kb on - strand, within EX28DRAFT_1296
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,306,365 - EX28DRAFT_1291 0.19 +0.1 1,306,579 + EX28DRAFT_1291 0.61 +0.0 1,306,579 + EX28DRAFT_1291 0.61 -0.2 1,306,580 - EX28DRAFT_1291 0.61 -0.3 1,306,795 + -0.3 1,306,806 + +0.1 1,306,806 + -0.5 1,306,806 + +0.3 1,306,806 + -0.4 1,306,806 + +0.3 1,306,807 - +0.3 1,306,807 - -0.6 1,306,807 - +0.5 1,306,808 + -0.5 1,306,808 + +0.4 1,306,808 + -0.4 1,306,809 - -0.1 1,306,815 - +1.1 1,306,840 + +1.1 1,306,840 + +0.1 1,306,904 + EX28DRAFT_1292 0.28 -0.7 1,306,912 - EX28DRAFT_1292 0.31 +1.0 1,307,061 + EX28DRAFT_1292 0.75 -0.1 1,307,061 + EX28DRAFT_1292 0.75 -0.2 1,307,062 - EX28DRAFT_1292 0.75 +0.6 1,307,065 - EX28DRAFT_1292 0.76 -0.1 1,307,077 + EX28DRAFT_1292 0.80 +0.0 1,307,078 - EX28DRAFT_1292 0.80 +0.2 1,307,109 + EX28DRAFT_1292 0.89 +0.3 1,307,109 + EX28DRAFT_1292 0.89 -1.9 1,307,109 + EX28DRAFT_1292 0.89 -0.2 1,307,109 + EX28DRAFT_1292 0.89 -1.3 1,307,110 - EX28DRAFT_1292 0.90 -1.2 1,307,110 - EX28DRAFT_1292 0.90 -1.2 1,307,179 - -0.4 1,307,284 - EX28DRAFT_1293 0.38 -1.1 1,307,425 + +1.2 1,307,474 - +1.5 1,307,477 + -1.4 1,307,478 - +0.2 1,307,490 - -0.1 1,307,520 + +0.7 1,307,520 + -0.5 1,307,521 - -0.6 1,307,522 + -0.6 1,307,530 + -0.0 1,307,530 + +0.4 1,307,531 - -0.4 1,307,531 - +0.2 1,307,531 - -0.6 1,307,570 - -0.4 1,307,598 + -1.7 1,307,598 + -0.4 1,307,599 - -0.2 1,307,642 - EX28DRAFT_1294 0.33 -0.0 1,307,648 - EX28DRAFT_1294 0.37 +1.4 1,307,688 + EX28DRAFT_1294 0.64 -0.0 1,307,688 + EX28DRAFT_1294 0.64 -0.5 1,307,783 + -1.3 1,307,803 - +1.1 1,307,803 - -0.1 1,307,803 - -0.8 1,307,803 - -0.6 1,307,803 - -0.6 1,307,815 + EX28DRAFT_1295 0.12 -0.9 1,307,894 - EX28DRAFT_1295 0.32 +0.4 1,308,131 - +0.1 1,308,258 + EX28DRAFT_1296 0.24 +0.1 1,308,259 - EX28DRAFT_1296 0.24 +0.6 1,308,320 - EX28DRAFT_1296 0.38 -1.5 1,308,321 + EX28DRAFT_1296 0.38 +1.2 1,308,321 + EX28DRAFT_1296 0.38 -0.0 1,308,321 + EX28DRAFT_1296 0.38 -0.1 1,308,322 - EX28DRAFT_1296 0.39 +0.9 1,308,322 - EX28DRAFT_1296 0.39 +0.6
Or see this region's nucleotide sequence