Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1284

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1280 and EX28DRAFT_1281 overlap by 1 nucleotidesEX28DRAFT_1281 and EX28DRAFT_1282 are separated by 2 nucleotidesEX28DRAFT_1282 and EX28DRAFT_1283 are separated by 2 nucleotidesEX28DRAFT_1283 and EX28DRAFT_1284 are separated by 9 nucleotidesEX28DRAFT_1284 and EX28DRAFT_1285 are separated by 11 nucleotidesEX28DRAFT_1285 and EX28DRAFT_1286 are separated by 3 nucleotides EX28DRAFT_1280: EX28DRAFT_1280 - hypothetical protein, at 1,297,313 to 1,297,663 _1280 EX28DRAFT_1281: EX28DRAFT_1281 - hypothetical protein, at 1,297,663 to 1,297,836 _1281 EX28DRAFT_1282: EX28DRAFT_1282 - hypothetical protein, at 1,297,839 to 1,298,216 _1282 EX28DRAFT_1283: EX28DRAFT_1283 - hypothetical protein, at 1,298,219 to 1,298,620 _1283 EX28DRAFT_1284: EX28DRAFT_1284 - hypothetical protein, at 1,298,630 to 1,299,706 _1284 EX28DRAFT_1285: EX28DRAFT_1285 - hypothetical protein, at 1,299,718 to 1,300,158 _1285 EX28DRAFT_1286: EX28DRAFT_1286 - hypothetical protein, at 1,300,162 to 1,301,547 _1286 Position (kb) 1298 1299 1300Strain fitness (log2 ratio) -2 -1 0 1at 1297.636 kb on + strandat 1297.639 kb on - strandat 1297.748 kb on + strand, within EX28DRAFT_1281at 1297.818 kb on + strand, within EX28DRAFT_1281at 1297.818 kb on + strand, within EX28DRAFT_1281at 1297.946 kb on + strand, within EX28DRAFT_1282at 1297.947 kb on - strand, within EX28DRAFT_1282at 1297.964 kb on - strand, within EX28DRAFT_1282at 1298.051 kb on - strand, within EX28DRAFT_1282at 1298.083 kb on + strand, within EX28DRAFT_1282at 1298.237 kb on - strandat 1298.545 kb on - strand, within EX28DRAFT_1283at 1298.621 kb on - strandat 1298.621 kb on - strandat 1298.621 kb on - strandat 1298.655 kb on + strandat 1298.667 kb on - strandat 1298.667 kb on - strandat 1298.773 kb on + strand, within EX28DRAFT_1284at 1298.801 kb on + strand, within EX28DRAFT_1284at 1298.910 kb on + strand, within EX28DRAFT_1284at 1298.911 kb on - strand, within EX28DRAFT_1284at 1298.911 kb on - strand, within EX28DRAFT_1284at 1298.946 kb on + strand, within EX28DRAFT_1284at 1298.946 kb on + strand, within EX28DRAFT_1284at 1298.984 kb on - strand, within EX28DRAFT_1284at 1298.984 kb on - strand, within EX28DRAFT_1284at 1299.062 kb on + strand, within EX28DRAFT_1284at 1299.124 kb on - strand, within EX28DRAFT_1284at 1299.124 kb on - strand, within EX28DRAFT_1284at 1299.157 kb on + strand, within EX28DRAFT_1284at 1299.158 kb on - strand, within EX28DRAFT_1284at 1299.159 kb on + strand, within EX28DRAFT_1284at 1299.159 kb on + strand, within EX28DRAFT_1284at 1299.159 kb on + strand, within EX28DRAFT_1284at 1299.159 kb on + strand, within EX28DRAFT_1284at 1299.160 kb on - strand, within EX28DRAFT_1284at 1299.168 kb on + strand, within EX28DRAFT_1284at 1299.260 kb on - strand, within EX28DRAFT_1284at 1299.309 kb on + strand, within EX28DRAFT_1284at 1299.355 kb on + strand, within EX28DRAFT_1284at 1299.355 kb on + strand, within EX28DRAFT_1284at 1299.505 kb on - strand, within EX28DRAFT_1284at 1299.533 kb on + strand, within EX28DRAFT_1284at 1299.723 kb on + strandat 1299.724 kb on - strandat 1299.764 kb on + strand, within EX28DRAFT_1285at 1299.764 kb on + strand, within EX28DRAFT_1285at 1299.764 kb on + strand, within EX28DRAFT_1285at 1299.764 kb on + strand, within EX28DRAFT_1285at 1299.765 kb on - strand, within EX28DRAFT_1285at 1299.781 kb on + strand, within EX28DRAFT_1285at 1299.782 kb on - strand, within EX28DRAFT_1285at 1299.782 kb on - strand, within EX28DRAFT_1285at 1299.785 kb on + strand, within EX28DRAFT_1285at 1299.860 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.975 kb on - strand, within EX28DRAFT_1285at 1299.975 kb on - strand, within EX28DRAFT_1285at 1299.982 kb on + strand, within EX28DRAFT_1285at 1299.986 kb on + strand, within EX28DRAFT_1285at 1299.987 kb on - strand, within EX28DRAFT_1285at 1299.987 kb on - strand, within EX28DRAFT_1285at 1300.136 kb on - strandat 1300.248 kb on - strandat 1300.248 kb on - strandat 1300.526 kb on + strand, within EX28DRAFT_1286at 1300.526 kb on + strand, within EX28DRAFT_1286at 1300.526 kb on + strand, within EX28DRAFT_1286at 1300.527 kb on - strand, within EX28DRAFT_1286at 1300.527 kb on - strand, within EX28DRAFT_1286at 1300.570 kb on - strand, within EX28DRAFT_1286at 1300.641 kb on - strand, within EX28DRAFT_1286

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,297,636 + -0.1
1,297,639 - -0.2
1,297,748 + EX28DRAFT_1281 0.49 -0.1
1,297,818 + EX28DRAFT_1281 0.89 -0.2
1,297,818 + EX28DRAFT_1281 0.89 -0.3
1,297,946 + EX28DRAFT_1282 0.28 -0.1
1,297,947 - EX28DRAFT_1282 0.29 +0.1
1,297,964 - EX28DRAFT_1282 0.33 -0.1
1,298,051 - EX28DRAFT_1282 0.56 -0.2
1,298,083 + EX28DRAFT_1282 0.65 -2.4
1,298,237 - +0.9
1,298,545 - EX28DRAFT_1283 0.81 -0.3
1,298,621 - +0.2
1,298,621 - +0.3
1,298,621 - -0.2
1,298,655 + +0.3
1,298,667 - -0.3
1,298,667 - +0.0
1,298,773 + EX28DRAFT_1284 0.13 -0.8
1,298,801 + EX28DRAFT_1284 0.16 -1.5
1,298,910 + EX28DRAFT_1284 0.26 -0.9
1,298,911 - EX28DRAFT_1284 0.26 +0.0
1,298,911 - EX28DRAFT_1284 0.26 -1.7
1,298,946 + EX28DRAFT_1284 0.29 +0.0
1,298,946 + EX28DRAFT_1284 0.29 +0.1
1,298,984 - EX28DRAFT_1284 0.33 +0.5
1,298,984 - EX28DRAFT_1284 0.33 -2.0
1,299,062 + EX28DRAFT_1284 0.40 +0.4
1,299,124 - EX28DRAFT_1284 0.46 -0.4
1,299,124 - EX28DRAFT_1284 0.46 +0.5
1,299,157 + EX28DRAFT_1284 0.49 -2.3
1,299,158 - EX28DRAFT_1284 0.49 -0.8
1,299,159 + EX28DRAFT_1284 0.49 -0.2
1,299,159 + EX28DRAFT_1284 0.49 -0.3
1,299,159 + EX28DRAFT_1284 0.49 -0.3
1,299,159 + EX28DRAFT_1284 0.49 -0.0
1,299,160 - EX28DRAFT_1284 0.49 +0.7
1,299,168 + EX28DRAFT_1284 0.50 -0.2
1,299,260 - EX28DRAFT_1284 0.58 +0.7
1,299,309 + EX28DRAFT_1284 0.63 -0.0
1,299,355 + EX28DRAFT_1284 0.67 -0.6
1,299,355 + EX28DRAFT_1284 0.67 +0.6
1,299,505 - EX28DRAFT_1284 0.81 -0.6
1,299,533 + EX28DRAFT_1284 0.84 +0.2
1,299,723 + -0.8
1,299,724 - +0.1
1,299,764 + EX28DRAFT_1285 0.10 -0.0
1,299,764 + EX28DRAFT_1285 0.10 +0.3
1,299,764 + EX28DRAFT_1285 0.10 +0.2
1,299,764 + EX28DRAFT_1285 0.10 +0.1
1,299,765 - EX28DRAFT_1285 0.11 -0.5
1,299,781 + EX28DRAFT_1285 0.14 -1.1
1,299,782 - EX28DRAFT_1285 0.15 -0.0
1,299,782 - EX28DRAFT_1285 0.15 -0.1
1,299,785 + EX28DRAFT_1285 0.15 -0.2
1,299,860 + EX28DRAFT_1285 0.32 +1.1
1,299,974 + EX28DRAFT_1285 0.58 +0.5
1,299,974 + EX28DRAFT_1285 0.58 -1.5
1,299,974 + EX28DRAFT_1285 0.58 -0.7
1,299,974 + EX28DRAFT_1285 0.58 +0.2
1,299,974 + EX28DRAFT_1285 0.58 -0.0
1,299,975 - EX28DRAFT_1285 0.58 +1.0
1,299,975 - EX28DRAFT_1285 0.58 -0.4
1,299,982 + EX28DRAFT_1285 0.60 +0.4
1,299,986 + EX28DRAFT_1285 0.61 +1.4
1,299,987 - EX28DRAFT_1285 0.61 -0.7
1,299,987 - EX28DRAFT_1285 0.61 -0.0
1,300,136 - +0.1
1,300,248 - -0.2
1,300,248 - +0.2
1,300,526 + EX28DRAFT_1286 0.26 +1.3
1,300,526 + EX28DRAFT_1286 0.26 +0.0
1,300,526 + EX28DRAFT_1286 0.26 -0.8
1,300,527 - EX28DRAFT_1286 0.26 +0.4
1,300,527 - EX28DRAFT_1286 0.26 +0.2
1,300,570 - EX28DRAFT_1286 0.29 +0.7
1,300,641 - EX28DRAFT_1286 0.35 -1.2

Or see this region's nucleotide sequence