Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1237

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1235 and EX28DRAFT_1236 are separated by 114 nucleotidesEX28DRAFT_1236 and EX28DRAFT_1237 overlap by 14 nucleotidesEX28DRAFT_1237 and EX28DRAFT_1238 are separated by 43 nucleotides EX28DRAFT_1235: EX28DRAFT_1235 - Aspartate/tyrosine/aromatic aminotransferase, at 1,253,797 to 1,254,966 _1235 EX28DRAFT_1236: EX28DRAFT_1236 - Transcriptional regulator, at 1,255,081 to 1,255,923 _1236 EX28DRAFT_1237: EX28DRAFT_1237 - Carboxylesterase type B, at 1,255,910 to 1,257,415 _1237 EX28DRAFT_1238: EX28DRAFT_1238 - Uncharacterized protein conserved in bacteria, at 1,257,459 to 1,258,802 _1238 Position (kb) 1255 1256 1257 1258Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1255.070 kb on + strandat 1255.071 kb on - strandat 1255.078 kb on + strandat 1255.078 kb on + strandat 1255.078 kb on + strandat 1255.079 kb on - strandat 1255.079 kb on - strandat 1255.079 kb on - strandat 1255.079 kb on - strandat 1255.080 kb on + strandat 1255.081 kb on - strandat 1255.081 kb on - strandat 1255.081 kb on - strandat 1255.572 kb on - strand, within EX28DRAFT_1236at 1255.805 kb on + strand, within EX28DRAFT_1236at 1255.826 kb on + strand, within EX28DRAFT_1236at 1255.827 kb on - strand, within EX28DRAFT_1236at 1255.969 kb on + strandat 1256.113 kb on - strand, within EX28DRAFT_1237at 1256.158 kb on - strand, within EX28DRAFT_1237at 1256.199 kb on + strand, within EX28DRAFT_1237at 1256.199 kb on + strand, within EX28DRAFT_1237at 1256.199 kb on + strand, within EX28DRAFT_1237at 1256.200 kb on - strand, within EX28DRAFT_1237at 1256.200 kb on - strand, within EX28DRAFT_1237at 1256.200 kb on - strand, within EX28DRAFT_1237at 1256.236 kb on - strand, within EX28DRAFT_1237at 1256.236 kb on - strand, within EX28DRAFT_1237at 1256.262 kb on + strand, within EX28DRAFT_1237at 1256.262 kb on + strand, within EX28DRAFT_1237at 1256.263 kb on - strand, within EX28DRAFT_1237at 1256.384 kb on + strand, within EX28DRAFT_1237at 1256.405 kb on - strand, within EX28DRAFT_1237at 1256.933 kb on - strand, within EX28DRAFT_1237at 1257.005 kb on - strand, within EX28DRAFT_1237at 1257.052 kb on - strand, within EX28DRAFT_1237at 1257.080 kb on - strand, within EX28DRAFT_1237at 1257.153 kb on + strand, within EX28DRAFT_1237at 1257.195 kb on - strand, within EX28DRAFT_1237at 1257.322 kb on - strandat 1257.881 kb on + strand, within EX28DRAFT_1238at 1257.886 kb on + strand, within EX28DRAFT_1238at 1258.021 kb on - strand, within EX28DRAFT_1238at 1258.021 kb on - strand, within EX28DRAFT_1238at 1258.078 kb on + strand, within EX28DRAFT_1238at 1258.079 kb on - strand, within EX28DRAFT_1238at 1258.079 kb on - strand, within EX28DRAFT_1238at 1258.140 kb on - strand, within EX28DRAFT_1238at 1258.201 kb on + strand, within EX28DRAFT_1238at 1258.201 kb on + strand, within EX28DRAFT_1238at 1258.287 kb on - strand, within EX28DRAFT_1238

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,255,070 + -2.8
1,255,071 - -0.4
1,255,078 + +0.1
1,255,078 + -0.5
1,255,078 + -1.8
1,255,079 - +0.1
1,255,079 - -1.2
1,255,079 - -2.6
1,255,079 - -0.2
1,255,080 + +2.0
1,255,081 - +0.1
1,255,081 - +0.1
1,255,081 - +0.2
1,255,572 - EX28DRAFT_1236 0.58 -0.1
1,255,805 + EX28DRAFT_1236 0.86 +0.1
1,255,826 + EX28DRAFT_1236 0.88 -0.5
1,255,827 - EX28DRAFT_1236 0.88 +0.5
1,255,969 + +0.4
1,256,113 - EX28DRAFT_1237 0.13 +0.6
1,256,158 - EX28DRAFT_1237 0.16 +0.5
1,256,199 + EX28DRAFT_1237 0.19 +0.1
1,256,199 + EX28DRAFT_1237 0.19 +2.0
1,256,199 + EX28DRAFT_1237 0.19 +0.2
1,256,200 - EX28DRAFT_1237 0.19 -0.0
1,256,200 - EX28DRAFT_1237 0.19 +0.0
1,256,200 - EX28DRAFT_1237 0.19 -0.1
1,256,236 - EX28DRAFT_1237 0.22 -0.1
1,256,236 - EX28DRAFT_1237 0.22 +1.3
1,256,262 + EX28DRAFT_1237 0.23 -0.1
1,256,262 + EX28DRAFT_1237 0.23 +1.6
1,256,263 - EX28DRAFT_1237 0.23 -0.2
1,256,384 + EX28DRAFT_1237 0.31 -0.5
1,256,405 - EX28DRAFT_1237 0.33 -0.2
1,256,933 - EX28DRAFT_1237 0.68 +0.3
1,257,005 - EX28DRAFT_1237 0.73 -0.3
1,257,052 - EX28DRAFT_1237 0.76 +0.5
1,257,080 - EX28DRAFT_1237 0.78 +0.8
1,257,153 + EX28DRAFT_1237 0.83 -0.4
1,257,195 - EX28DRAFT_1237 0.85 -0.7
1,257,322 - -0.5
1,257,881 + EX28DRAFT_1238 0.31 -0.3
1,257,886 + EX28DRAFT_1238 0.32 +0.4
1,258,021 - EX28DRAFT_1238 0.42 -0.9
1,258,021 - EX28DRAFT_1238 0.42 +0.1
1,258,078 + EX28DRAFT_1238 0.46 -0.5
1,258,079 - EX28DRAFT_1238 0.46 -1.4
1,258,079 - EX28DRAFT_1238 0.46 -1.5
1,258,140 - EX28DRAFT_1238 0.51 +0.1
1,258,201 + EX28DRAFT_1238 0.55 +0.4
1,258,201 + EX28DRAFT_1238 0.55 +0.3
1,258,287 - EX28DRAFT_1238 0.62 -0.6

Or see this region's nucleotide sequence