Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1186

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1184 and EX28DRAFT_1185 overlap by 4 nucleotidesEX28DRAFT_1185 and EX28DRAFT_1186 are separated by 44 nucleotidesEX28DRAFT_1186 and EX28DRAFT_1187 are separated by 145 nucleotidesEX28DRAFT_1187 and EX28DRAFT_1188 are separated by 12 nucleotides EX28DRAFT_1184: EX28DRAFT_1184 - Signal transduction histidine kinase, at 1,204,476 to 1,205,774 _1184 EX28DRAFT_1185: EX28DRAFT_1185 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,205,771 to 1,206,511 _1185 EX28DRAFT_1186: EX28DRAFT_1186 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,206,556 to 1,207,551 _1186 EX28DRAFT_1187: EX28DRAFT_1187 - Acetyltransferase (GNAT) family, at 1,207,697 to 1,208,137 _1187 EX28DRAFT_1188: EX28DRAFT_1188 - Sortase and related acyltransferases, at 1,208,150 to 1,208,620 _1188 Position (kb) 1206 1207 1208Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1205.806 kb on + strandat 1205.814 kb on + strandat 1205.839 kb on + strandat 1205.841 kb on + strandat 1206.050 kb on + strand, within EX28DRAFT_1185at 1206.204 kb on + strand, within EX28DRAFT_1185at 1206.204 kb on + strand, within EX28DRAFT_1185at 1206.204 kb on + strand, within EX28DRAFT_1185at 1206.205 kb on - strand, within EX28DRAFT_1185at 1206.205 kb on - strand, within EX28DRAFT_1185at 1206.205 kb on - strand, within EX28DRAFT_1185at 1206.205 kb on - strand, within EX28DRAFT_1185at 1206.288 kb on + strand, within EX28DRAFT_1185at 1206.288 kb on + strand, within EX28DRAFT_1185at 1206.289 kb on - strand, within EX28DRAFT_1185at 1206.289 kb on - strand, within EX28DRAFT_1185at 1206.303 kb on - strand, within EX28DRAFT_1185at 1206.320 kb on - strand, within EX28DRAFT_1185at 1206.367 kb on + strand, within EX28DRAFT_1185at 1206.436 kb on + strand, within EX28DRAFT_1185at 1206.436 kb on + strand, within EX28DRAFT_1185at 1206.493 kb on + strandat 1206.502 kb on + strandat 1206.502 kb on + strandat 1206.502 kb on + strandat 1206.547 kb on + strandat 1206.547 kb on + strandat 1206.548 kb on - strandat 1206.653 kb on + strandat 1206.773 kb on + strand, within EX28DRAFT_1186at 1206.782 kb on + strand, within EX28DRAFT_1186at 1206.989 kb on + strand, within EX28DRAFT_1186at 1206.998 kb on + strand, within EX28DRAFT_1186at 1207.168 kb on - strand, within EX28DRAFT_1186at 1207.168 kb on - strand, within EX28DRAFT_1186at 1207.168 kb on - strand, within EX28DRAFT_1186at 1207.170 kb on + strand, within EX28DRAFT_1186at 1207.171 kb on - strand, within EX28DRAFT_1186at 1207.192 kb on + strand, within EX28DRAFT_1186at 1207.332 kb on - strand, within EX28DRAFT_1186at 1207.332 kb on - strand, within EX28DRAFT_1186at 1207.341 kb on + strand, within EX28DRAFT_1186at 1207.347 kb on - strand, within EX28DRAFT_1186at 1207.363 kb on + strand, within EX28DRAFT_1186at 1207.533 kb on - strandat 1207.586 kb on + strandat 1207.586 kb on + strandat 1207.586 kb on + strandat 1207.587 kb on - strandat 1207.588 kb on + strandat 1207.588 kb on + strandat 1207.588 kb on + strandat 1207.588 kb on + strandat 1207.588 kb on + strandat 1207.588 kb on + strandat 1207.589 kb on - strandat 1207.589 kb on - strandat 1207.589 kb on - strandat 1207.589 kb on - strandat 1207.604 kb on + strandat 1207.605 kb on - strandat 1207.605 kb on - strandat 1207.646 kb on + strandat 1207.646 kb on + strandat 1207.647 kb on - strandat 1207.650 kb on + strandat 1207.650 kb on + strandat 1207.651 kb on - strandat 1207.665 kb on + strandat 1207.723 kb on - strandat 1207.740 kb on + strandat 1207.741 kb on - strand, within EX28DRAFT_1187at 1207.749 kb on + strand, within EX28DRAFT_1187at 1207.756 kb on + strand, within EX28DRAFT_1187at 1207.791 kb on - strand, within EX28DRAFT_1187at 1207.791 kb on - strand, within EX28DRAFT_1187at 1207.838 kb on - strand, within EX28DRAFT_1187at 1208.049 kb on + strand, within EX28DRAFT_1187at 1208.049 kb on + strand, within EX28DRAFT_1187at 1208.050 kb on - strand, within EX28DRAFT_1187at 1208.069 kb on - strand, within EX28DRAFT_1187at 1208.071 kb on - strand, within EX28DRAFT_1187at 1208.101 kb on - strandat 1208.101 kb on - strandat 1208.115 kb on - strandat 1208.151 kb on + strandat 1208.151 kb on + strandat 1208.152 kb on - strandat 1208.180 kb on + strandat 1208.180 kb on + strandat 1208.211 kb on + strand, within EX28DRAFT_1188at 1208.212 kb on - strand, within EX28DRAFT_1188at 1208.375 kb on + strand, within EX28DRAFT_1188at 1208.428 kb on + strand, within EX28DRAFT_1188at 1208.429 kb on - strand, within EX28DRAFT_1188at 1208.452 kb on - strand, within EX28DRAFT_1188at 1208.460 kb on + strand, within EX28DRAFT_1188at 1208.533 kb on - strand, within EX28DRAFT_1188at 1208.533 kb on - strand, within EX28DRAFT_1188

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,205,806 + -0.8
1,205,814 + -0.4
1,205,839 + -0.5
1,205,841 + -0.5
1,206,050 + EX28DRAFT_1185 0.38 +0.1
1,206,204 + EX28DRAFT_1185 0.58 +0.0
1,206,204 + EX28DRAFT_1185 0.58 +0.1
1,206,204 + EX28DRAFT_1185 0.58 -0.8
1,206,205 - EX28DRAFT_1185 0.59 +0.8
1,206,205 - EX28DRAFT_1185 0.59 -0.3
1,206,205 - EX28DRAFT_1185 0.59 +0.1
1,206,205 - EX28DRAFT_1185 0.59 +0.2
1,206,288 + EX28DRAFT_1185 0.70 -0.6
1,206,288 + EX28DRAFT_1185 0.70 -0.1
1,206,289 - EX28DRAFT_1185 0.70 +0.7
1,206,289 - EX28DRAFT_1185 0.70 -0.2
1,206,303 - EX28DRAFT_1185 0.72 -1.1
1,206,320 - EX28DRAFT_1185 0.74 -0.2
1,206,367 + EX28DRAFT_1185 0.80 +2.8
1,206,436 + EX28DRAFT_1185 0.90 +0.7
1,206,436 + EX28DRAFT_1185 0.90 +0.7
1,206,493 + +0.5
1,206,502 + -1.3
1,206,502 + +0.6
1,206,502 + +0.4
1,206,547 + +0.2
1,206,547 + -0.2
1,206,548 - -0.4
1,206,653 + +0.1
1,206,773 + EX28DRAFT_1186 0.22 +0.0
1,206,782 + EX28DRAFT_1186 0.23 +1.1
1,206,989 + EX28DRAFT_1186 0.43 +0.0
1,206,998 + EX28DRAFT_1186 0.44 -0.3
1,207,168 - EX28DRAFT_1186 0.61 -0.8
1,207,168 - EX28DRAFT_1186 0.61 -0.5
1,207,168 - EX28DRAFT_1186 0.61 +1.3
1,207,170 + EX28DRAFT_1186 0.62 -0.2
1,207,171 - EX28DRAFT_1186 0.62 +0.0
1,207,192 + EX28DRAFT_1186 0.64 +0.3
1,207,332 - EX28DRAFT_1186 0.78 +0.1
1,207,332 - EX28DRAFT_1186 0.78 +0.2
1,207,341 + EX28DRAFT_1186 0.79 +0.4
1,207,347 - EX28DRAFT_1186 0.79 +0.6
1,207,363 + EX28DRAFT_1186 0.81 +0.2
1,207,533 - -0.0
1,207,586 + -0.3
1,207,586 + +1.4
1,207,586 + -1.4
1,207,587 - +0.7
1,207,588 + +0.4
1,207,588 + -0.2
1,207,588 + -1.1
1,207,588 + -0.8
1,207,588 + -0.4
1,207,588 + +1.3
1,207,589 - -0.8
1,207,589 - -1.1
1,207,589 - +0.4
1,207,589 - +0.2
1,207,604 + -0.5
1,207,605 - +0.2
1,207,605 - +0.1
1,207,646 + -0.3
1,207,646 + +0.2
1,207,647 - +0.5
1,207,650 + -2.0
1,207,650 + +0.1
1,207,651 - +0.1
1,207,665 + +0.4
1,207,723 - -0.1
1,207,740 + -1.6
1,207,741 - EX28DRAFT_1187 0.10 +0.2
1,207,749 + EX28DRAFT_1187 0.12 -0.0
1,207,756 + EX28DRAFT_1187 0.13 -0.6
1,207,791 - EX28DRAFT_1187 0.21 -0.0
1,207,791 - EX28DRAFT_1187 0.21 +0.3
1,207,838 - EX28DRAFT_1187 0.32 +0.7
1,208,049 + EX28DRAFT_1187 0.80 +0.3
1,208,049 + EX28DRAFT_1187 0.80 -0.5
1,208,050 - EX28DRAFT_1187 0.80 +0.1
1,208,069 - EX28DRAFT_1187 0.84 +0.5
1,208,071 - EX28DRAFT_1187 0.85 +0.8
1,208,101 - -1.0
1,208,101 - +0.4
1,208,115 - -0.2
1,208,151 + +0.9
1,208,151 + -0.1
1,208,152 - +0.5
1,208,180 + -0.0
1,208,180 + +1.6
1,208,211 + EX28DRAFT_1188 0.13 +0.1
1,208,212 - EX28DRAFT_1188 0.13 -1.2
1,208,375 + EX28DRAFT_1188 0.48 -0.2
1,208,428 + EX28DRAFT_1188 0.59 +0.0
1,208,429 - EX28DRAFT_1188 0.59 -0.0
1,208,452 - EX28DRAFT_1188 0.64 +0.4
1,208,460 + EX28DRAFT_1188 0.66 -0.7
1,208,533 - EX28DRAFT_1188 0.81 -1.7
1,208,533 - EX28DRAFT_1188 0.81 +0.1

Or see this region's nucleotide sequence