Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1177 and EX28DRAFT_1178 are separated by 38 nucleotides EX28DRAFT_1178 and EX28DRAFT_1179 are separated by 86 nucleotides EX28DRAFT_1179 and EX28DRAFT_1180 are separated by 290 nucleotides EX28DRAFT_1180 and EX28DRAFT_1181 are separated by 14 nucleotides
EX28DRAFT_1177: EX28DRAFT_1177 - Domain of unknown function (DUF4406), at 1,198,510 to 1,198,872
_1177
EX28DRAFT_1178: EX28DRAFT_1178 - transcriptional regulator, DeoR family, at 1,198,911 to 1,199,684
_1178
EX28DRAFT_1179: EX28DRAFT_1179 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 1,199,771 to 1,200,367
_1179
EX28DRAFT_1180: EX28DRAFT_1180 - DNA-binding HTH domain-containing proteins, at 1,200,658 to 1,201,350
_1180
EX28DRAFT_1181: EX28DRAFT_1181 - N-acyl-L-homoserine lactone synthetase, at 1,201,365 to 1,202,003
_1181
Position (kb)
1199
1200
1201 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1198.826 kb on - strand, within EX28DRAFT_1177 at 1198.826 kb on - strand, within EX28DRAFT_1177 at 1198.840 kb on + strand at 1199.202 kb on - strand, within EX28DRAFT_1178 at 1199.255 kb on - strand, within EX28DRAFT_1178 at 1199.255 kb on - strand, within EX28DRAFT_1178 at 1199.255 kb on - strand, within EX28DRAFT_1178 at 1199.255 kb on - strand, within EX28DRAFT_1178 at 1199.255 kb on - strand, within EX28DRAFT_1178 at 1199.539 kb on - strand, within EX28DRAFT_1178 at 1199.606 kb on + strand, within EX28DRAFT_1178 at 1199.610 kb on + strand at 1199.611 kb on - strand at 1199.739 kb on - strand at 1199.747 kb on + strand at 1199.748 kb on - strand at 1199.753 kb on - strand at 1199.753 kb on - strand at 1199.840 kb on - strand, within EX28DRAFT_1179 at 1199.846 kb on + strand, within EX28DRAFT_1179 at 1199.904 kb on - strand, within EX28DRAFT_1179 at 1199.904 kb on - strand, within EX28DRAFT_1179 at 1199.927 kb on - strand, within EX28DRAFT_1179 at 1199.936 kb on + strand, within EX28DRAFT_1179 at 1199.937 kb on - strand, within EX28DRAFT_1179 at 1200.066 kb on + strand, within EX28DRAFT_1179 at 1200.132 kb on - strand, within EX28DRAFT_1179 at 1200.134 kb on - strand, within EX28DRAFT_1179 at 1200.170 kb on + strand, within EX28DRAFT_1179 at 1200.316 kb on + strand at 1200.331 kb on + strand at 1200.349 kb on + strand at 1200.349 kb on + strand at 1200.349 kb on + strand at 1200.447 kb on + strand at 1200.448 kb on - strand at 1200.453 kb on - strand at 1200.521 kb on - strand at 1200.568 kb on - strand at 1200.568 kb on - strand at 1200.614 kb on + strand at 1200.617 kb on + strand at 1200.617 kb on + strand at 1200.619 kb on + strand at 1200.619 kb on + strand at 1200.620 kb on - strand at 1200.620 kb on - strand at 1200.620 kb on - strand at 1200.667 kb on - strand at 1200.670 kb on + strand at 1200.670 kb on + strand at 1200.670 kb on + strand at 1200.670 kb on + strand at 1200.671 kb on - strand at 1200.683 kb on + strand at 1200.762 kb on + strand, within EX28DRAFT_1180 at 1200.826 kb on + strand, within EX28DRAFT_1180 at 1200.827 kb on - strand, within EX28DRAFT_1180 at 1200.827 kb on - strand, within EX28DRAFT_1180 at 1200.842 kb on - strand, within EX28DRAFT_1180 at 1200.862 kb on - strand, within EX28DRAFT_1180 at 1201.041 kb on + strand, within EX28DRAFT_1180 at 1201.331 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,198,826 - EX28DRAFT_1177 0.87 -0.3 1,198,826 - EX28DRAFT_1177 0.87 -0.5 1,198,840 + +0.1 1,199,202 - EX28DRAFT_1178 0.38 -0.2 1,199,255 - EX28DRAFT_1178 0.44 +0.1 1,199,255 - EX28DRAFT_1178 0.44 +1.3 1,199,255 - EX28DRAFT_1178 0.44 -0.6 1,199,255 - EX28DRAFT_1178 0.44 -1.0 1,199,255 - EX28DRAFT_1178 0.44 +0.7 1,199,539 - EX28DRAFT_1178 0.81 -0.2 1,199,606 + EX28DRAFT_1178 0.90 -1.6 1,199,610 + -0.2 1,199,611 - -1.0 1,199,739 - -0.1 1,199,747 + -0.2 1,199,748 - +0.4 1,199,753 - +0.8 1,199,753 - -0.3 1,199,840 - EX28DRAFT_1179 0.12 -0.0 1,199,846 + EX28DRAFT_1179 0.13 +0.5 1,199,904 - EX28DRAFT_1179 0.22 +0.4 1,199,904 - EX28DRAFT_1179 0.22 +0.6 1,199,927 - EX28DRAFT_1179 0.26 +0.8 1,199,936 + EX28DRAFT_1179 0.28 -0.4 1,199,937 - EX28DRAFT_1179 0.28 +0.1 1,200,066 + EX28DRAFT_1179 0.49 +0.2 1,200,132 - EX28DRAFT_1179 0.60 +0.9 1,200,134 - EX28DRAFT_1179 0.61 +1.6 1,200,170 + EX28DRAFT_1179 0.67 -1.3 1,200,316 + +0.7 1,200,331 + -0.7 1,200,349 + +0.1 1,200,349 + -1.6 1,200,349 + +1.4 1,200,447 + +0.8 1,200,448 - +0.1 1,200,453 - -1.3 1,200,521 - -0.2 1,200,568 - +0.3 1,200,568 - +0.6 1,200,614 + -0.1 1,200,617 + +0.3 1,200,617 + +0.2 1,200,619 + -0.5 1,200,619 + -1.2 1,200,620 - -0.1 1,200,620 - +0.4 1,200,620 - -0.6 1,200,667 - -0.4 1,200,670 + -0.6 1,200,670 + +2.7 1,200,670 + +0.7 1,200,670 + +0.0 1,200,671 - +0.4 1,200,683 + -0.5 1,200,762 + EX28DRAFT_1180 0.15 +0.2 1,200,826 + EX28DRAFT_1180 0.24 -1.1 1,200,827 - EX28DRAFT_1180 0.24 +0.4 1,200,827 - EX28DRAFT_1180 0.24 -1.7 1,200,842 - EX28DRAFT_1180 0.27 -0.5 1,200,862 - EX28DRAFT_1180 0.29 +0.3 1,201,041 + EX28DRAFT_1180 0.55 -2.4 1,201,331 + -1.6
Or see this region's nucleotide sequence