Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1166 and EX28DRAFT_1167 are separated by 28 nucleotides EX28DRAFT_1167 and EX28DRAFT_1168 are separated by 11 nucleotides
EX28DRAFT_1166: EX28DRAFT_1166 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 1,187,360 to 1,188,745
_1166
EX28DRAFT_1167: EX28DRAFT_1167 - Uncharacterized conserved protein, at 1,188,774 to 1,189,115
_1167
EX28DRAFT_1168: EX28DRAFT_1168 - RND family efflux transporter, MFP subunit, at 1,189,127 to 1,190,377
_1168
Position (kb)
1188
1189
1190 Strain fitness (log2 ratio)
-1
0
1
2 at 1187.849 kb on - strand, within EX28DRAFT_1166 at 1187.863 kb on + strand, within EX28DRAFT_1166 at 1187.879 kb on + strand, within EX28DRAFT_1166 at 1187.900 kb on + strand, within EX28DRAFT_1166 at 1187.903 kb on - strand, within EX28DRAFT_1166 at 1187.952 kb on - strand, within EX28DRAFT_1166 at 1187.952 kb on - strand, within EX28DRAFT_1166 at 1187.952 kb on - strand, within EX28DRAFT_1166 at 1187.952 kb on - strand, within EX28DRAFT_1166 at 1188.044 kb on - strand, within EX28DRAFT_1166 at 1188.045 kb on + strand, within EX28DRAFT_1166 at 1188.045 kb on + strand, within EX28DRAFT_1166 at 1188.046 kb on - strand, within EX28DRAFT_1166 at 1188.209 kb on - strand, within EX28DRAFT_1166 at 1188.211 kb on + strand, within EX28DRAFT_1166 at 1188.391 kb on + strand, within EX28DRAFT_1166 at 1188.406 kb on + strand, within EX28DRAFT_1166 at 1188.419 kb on - strand, within EX28DRAFT_1166 at 1188.458 kb on + strand, within EX28DRAFT_1166 at 1188.459 kb on - strand, within EX28DRAFT_1166 at 1188.523 kb on + strand, within EX28DRAFT_1166 at 1188.595 kb on - strand, within EX28DRAFT_1166 at 1188.595 kb on - strand, within EX28DRAFT_1166 at 1188.597 kb on - strand, within EX28DRAFT_1166 at 1188.617 kb on + strand at 1188.749 kb on + strand at 1188.788 kb on + strand at 1188.941 kb on + strand, within EX28DRAFT_1167 at 1189.110 kb on - strand at 1189.149 kb on - strand at 1189.161 kb on + strand at 1189.272 kb on - strand, within EX28DRAFT_1168 at 1189.422 kb on + strand, within EX28DRAFT_1168 at 1189.457 kb on + strand, within EX28DRAFT_1168 at 1189.457 kb on + strand, within EX28DRAFT_1168 at 1189.458 kb on - strand, within EX28DRAFT_1168 at 1189.487 kb on + strand, within EX28DRAFT_1168 at 1189.490 kb on - strand, within EX28DRAFT_1168 at 1189.598 kb on - strand, within EX28DRAFT_1168 at 1189.598 kb on - strand, within EX28DRAFT_1168 at 1189.598 kb on - strand, within EX28DRAFT_1168 at 1189.600 kb on + strand, within EX28DRAFT_1168 at 1189.676 kb on - strand, within EX28DRAFT_1168 at 1189.676 kb on - strand, within EX28DRAFT_1168 at 1189.676 kb on - strand, within EX28DRAFT_1168 at 1189.825 kb on + strand, within EX28DRAFT_1168 at 1189.825 kb on + strand, within EX28DRAFT_1168 at 1189.825 kb on + strand, within EX28DRAFT_1168 at 1189.837 kb on + strand, within EX28DRAFT_1168 at 1189.837 kb on + strand, within EX28DRAFT_1168 at 1189.936 kb on + strand, within EX28DRAFT_1168 at 1190.081 kb on + strand, within EX28DRAFT_1168
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,187,849 - EX28DRAFT_1166 0.35 -1.3 1,187,863 + EX28DRAFT_1166 0.36 +0.3 1,187,879 + EX28DRAFT_1166 0.37 +0.2 1,187,900 + EX28DRAFT_1166 0.39 -0.7 1,187,903 - EX28DRAFT_1166 0.39 -0.0 1,187,952 - EX28DRAFT_1166 0.43 +0.8 1,187,952 - EX28DRAFT_1166 0.43 -0.8 1,187,952 - EX28DRAFT_1166 0.43 -0.5 1,187,952 - EX28DRAFT_1166 0.43 +0.3 1,188,044 - EX28DRAFT_1166 0.49 +0.5 1,188,045 + EX28DRAFT_1166 0.49 +0.1 1,188,045 + EX28DRAFT_1166 0.49 +2.0 1,188,046 - EX28DRAFT_1166 0.49 -0.2 1,188,209 - EX28DRAFT_1166 0.61 -0.3 1,188,211 + EX28DRAFT_1166 0.61 -0.3 1,188,391 + EX28DRAFT_1166 0.74 -1.3 1,188,406 + EX28DRAFT_1166 0.75 +0.0 1,188,419 - EX28DRAFT_1166 0.76 +0.2 1,188,458 + EX28DRAFT_1166 0.79 +0.4 1,188,459 - EX28DRAFT_1166 0.79 +0.4 1,188,523 + EX28DRAFT_1166 0.84 -0.1 1,188,595 - EX28DRAFT_1166 0.89 -0.5 1,188,595 - EX28DRAFT_1166 0.89 +1.1 1,188,597 - EX28DRAFT_1166 0.89 +0.7 1,188,617 + +0.5 1,188,749 + -0.6 1,188,788 + -0.2 1,188,941 + EX28DRAFT_1167 0.49 -0.5 1,189,110 - -0.5 1,189,149 - +0.4 1,189,161 + -0.0 1,189,272 - EX28DRAFT_1168 0.12 +0.6 1,189,422 + EX28DRAFT_1168 0.24 -0.0 1,189,457 + EX28DRAFT_1168 0.26 -0.5 1,189,457 + EX28DRAFT_1168 0.26 +1.0 1,189,458 - EX28DRAFT_1168 0.26 -0.6 1,189,487 + EX28DRAFT_1168 0.29 +0.9 1,189,490 - EX28DRAFT_1168 0.29 -0.0 1,189,598 - EX28DRAFT_1168 0.38 -0.7 1,189,598 - EX28DRAFT_1168 0.38 +0.8 1,189,598 - EX28DRAFT_1168 0.38 +1.1 1,189,600 + EX28DRAFT_1168 0.38 -0.2 1,189,676 - EX28DRAFT_1168 0.44 +0.1 1,189,676 - EX28DRAFT_1168 0.44 +0.1 1,189,676 - EX28DRAFT_1168 0.44 +0.5 1,189,825 + EX28DRAFT_1168 0.56 -1.7 1,189,825 + EX28DRAFT_1168 0.56 +0.2 1,189,825 + EX28DRAFT_1168 0.56 +0.1 1,189,837 + EX28DRAFT_1168 0.57 -0.8 1,189,837 + EX28DRAFT_1168 0.57 +0.4 1,189,936 + EX28DRAFT_1168 0.65 +0.1 1,190,081 + EX28DRAFT_1168 0.76 -0.4
Or see this region's nucleotide sequence