Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1159 and EX28DRAFT_1160 overlap by 4 nucleotides EX28DRAFT_1160 and EX28DRAFT_1161 are separated by 9 nucleotides EX28DRAFT_1161 and EX28DRAFT_1162 are separated by 32 nucleotides
EX28DRAFT_1159: EX28DRAFT_1159 - Predicted membrane protein, at 1,179,885 to 1,180,607
_1159
EX28DRAFT_1160: EX28DRAFT_1160 - Predicted membrane protein, at 1,180,604 to 1,181,590
_1160
EX28DRAFT_1161: EX28DRAFT_1161 - Protein of unknown function (DUF2891), at 1,181,600 to 1,182,595
_1161
EX28DRAFT_1162: EX28DRAFT_1162 - Major Facilitator Superfamily, at 1,182,628 to 1,184,043
_1162
Position (kb)
1181
1182
1183 Strain fitness (log2 ratio)
-1
0
1 at 1180.638 kb on - strand at 1180.868 kb on - strand, within EX28DRAFT_1160 at 1180.868 kb on - strand, within EX28DRAFT_1160 at 1180.868 kb on - strand, within EX28DRAFT_1160 at 1180.868 kb on - strand, within EX28DRAFT_1160 at 1181.187 kb on + strand, within EX28DRAFT_1160 at 1181.204 kb on - strand, within EX28DRAFT_1160 at 1181.368 kb on + strand, within EX28DRAFT_1160 at 1181.500 kb on + strand at 1181.501 kb on - strand at 1181.501 kb on - strand at 1181.504 kb on + strand at 1181.505 kb on - strand at 1181.505 kb on - strand at 1181.505 kb on - strand at 1181.570 kb on + strand at 1181.571 kb on - strand at 1181.571 kb on - strand at 1181.651 kb on + strand at 1181.651 kb on + strand at 1181.667 kb on - strand at 1181.892 kb on - strand, within EX28DRAFT_1161 at 1182.054 kb on - strand, within EX28DRAFT_1161 at 1182.095 kb on + strand, within EX28DRAFT_1161 at 1182.194 kb on + strand, within EX28DRAFT_1161 at 1182.245 kb on + strand, within EX28DRAFT_1161 at 1182.245 kb on + strand, within EX28DRAFT_1161 at 1182.245 kb on + strand, within EX28DRAFT_1161 at 1182.442 kb on + strand, within EX28DRAFT_1161 at 1182.443 kb on - strand, within EX28DRAFT_1161 at 1182.448 kb on + strand, within EX28DRAFT_1161 at 1182.545 kb on + strand at 1182.546 kb on - strand at 1182.775 kb on + strand, within EX28DRAFT_1162 at 1182.842 kb on + strand, within EX28DRAFT_1162 at 1182.842 kb on + strand, within EX28DRAFT_1162 at 1182.943 kb on - strand, within EX28DRAFT_1162 at 1183.133 kb on + strand, within EX28DRAFT_1162 at 1183.133 kb on + strand, within EX28DRAFT_1162 at 1183.284 kb on + strand, within EX28DRAFT_1162 at 1183.377 kb on + strand, within EX28DRAFT_1162 at 1183.544 kb on - strand, within EX28DRAFT_1162
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,180,638 - +0.5 1,180,868 - EX28DRAFT_1160 0.27 -0.0 1,180,868 - EX28DRAFT_1160 0.27 -0.7 1,180,868 - EX28DRAFT_1160 0.27 -0.2 1,180,868 - EX28DRAFT_1160 0.27 +0.0 1,181,187 + EX28DRAFT_1160 0.59 -0.1 1,181,204 - EX28DRAFT_1160 0.61 +0.4 1,181,368 + EX28DRAFT_1160 0.77 +0.4 1,181,500 + -1.4 1,181,501 - -0.0 1,181,501 - +0.3 1,181,504 + -0.2 1,181,505 - -0.4 1,181,505 - -0.7 1,181,505 - -1.5 1,181,570 + +1.0 1,181,571 - -0.2 1,181,571 - -0.0 1,181,651 + +0.2 1,181,651 + +0.4 1,181,667 - +0.2 1,181,892 - EX28DRAFT_1161 0.29 +0.3 1,182,054 - EX28DRAFT_1161 0.46 -1.0 1,182,095 + EX28DRAFT_1161 0.50 +0.1 1,182,194 + EX28DRAFT_1161 0.60 +0.1 1,182,245 + EX28DRAFT_1161 0.65 -1.3 1,182,245 + EX28DRAFT_1161 0.65 -0.2 1,182,245 + EX28DRAFT_1161 0.65 +0.3 1,182,442 + EX28DRAFT_1161 0.85 -0.6 1,182,443 - EX28DRAFT_1161 0.85 +0.5 1,182,448 + EX28DRAFT_1161 0.85 -1.1 1,182,545 + -0.1 1,182,546 - +0.2 1,182,775 + EX28DRAFT_1162 0.10 +0.1 1,182,842 + EX28DRAFT_1162 0.15 +0.2 1,182,842 + EX28DRAFT_1162 0.15 +1.0 1,182,943 - EX28DRAFT_1162 0.22 -0.7 1,183,133 + EX28DRAFT_1162 0.36 +0.3 1,183,133 + EX28DRAFT_1162 0.36 +0.5 1,183,284 + EX28DRAFT_1162 0.46 -0.4 1,183,377 + EX28DRAFT_1162 0.53 +0.3 1,183,544 - EX28DRAFT_1162 0.65 -1.2
Or see this region's nucleotide sequence