Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1156 and EX28DRAFT_1157 are separated by 15 nucleotides EX28DRAFT_1157 and EX28DRAFT_1158 are separated by 2 nucleotides EX28DRAFT_1158 and EX28DRAFT_1159 are separated by 199 nucleotides
EX28DRAFT_1156: EX28DRAFT_1156 - malto-oligosyltrehalose synthase, at 1,174,578 to 1,177,046
_1156
EX28DRAFT_1157: EX28DRAFT_1157 - glycogen debranching enzyme GlgX, at 1,177,062 to 1,179,137
_1157
EX28DRAFT_1158: EX28DRAFT_1158 - Predicted transcription regulator, contains HTH domain (MarR family), at 1,179,140 to 1,179,685
_1158
EX28DRAFT_1159: EX28DRAFT_1159 - Predicted membrane protein, at 1,179,885 to 1,180,607
_1159
Position (kb)
1177
1178
1179
1180 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1176.117 kb on + strand, within EX28DRAFT_1156 at 1176.303 kb on - strand, within EX28DRAFT_1156 at 1176.393 kb on + strand, within EX28DRAFT_1156 at 1176.414 kb on + strand, within EX28DRAFT_1156 at 1176.464 kb on + strand, within EX28DRAFT_1156 at 1176.559 kb on - strand, within EX28DRAFT_1156 at 1176.560 kb on - strand, within EX28DRAFT_1156 at 1176.578 kb on + strand, within EX28DRAFT_1156 at 1176.579 kb on - strand, within EX28DRAFT_1156 at 1176.579 kb on - strand, within EX28DRAFT_1156 at 1176.908 kb on + strand at 1177.021 kb on + strand at 1177.021 kb on + strand at 1177.074 kb on - strand at 1177.076 kb on + strand at 1177.076 kb on + strand at 1177.076 kb on + strand at 1177.076 kb on + strand at 1177.076 kb on + strand at 1177.076 kb on + strand at 1177.076 kb on + strand at 1177.076 kb on + strand at 1177.077 kb on - strand at 1177.077 kb on - strand at 1177.118 kb on + strand at 1177.119 kb on - strand at 1177.119 kb on - strand at 1177.122 kb on + strand at 1177.123 kb on - strand at 1177.236 kb on + strand at 1177.236 kb on + strand at 1177.238 kb on + strand at 1177.239 kb on - strand at 1177.261 kb on - strand at 1177.291 kb on - strand, within EX28DRAFT_1157 at 1177.291 kb on - strand, within EX28DRAFT_1157 at 1177.368 kb on + strand, within EX28DRAFT_1157 at 1177.447 kb on + strand, within EX28DRAFT_1157 at 1177.447 kb on + strand, within EX28DRAFT_1157 at 1177.567 kb on - strand, within EX28DRAFT_1157 at 1177.666 kb on - strand, within EX28DRAFT_1157 at 1177.806 kb on + strand, within EX28DRAFT_1157 at 1177.807 kb on - strand, within EX28DRAFT_1157 at 1177.890 kb on + strand, within EX28DRAFT_1157 at 1177.891 kb on - strand, within EX28DRAFT_1157 at 1177.938 kb on - strand, within EX28DRAFT_1157 at 1177.953 kb on + strand, within EX28DRAFT_1157 at 1177.953 kb on + strand, within EX28DRAFT_1157 at 1177.953 kb on + strand, within EX28DRAFT_1157 at 1177.953 kb on + strand, within EX28DRAFT_1157 at 1177.954 kb on - strand, within EX28DRAFT_1157 at 1177.954 kb on - strand, within EX28DRAFT_1157 at 1177.954 kb on - strand, within EX28DRAFT_1157 at 1177.954 kb on - strand, within EX28DRAFT_1157 at 1177.954 kb on - strand, within EX28DRAFT_1157 at 1177.960 kb on - strand, within EX28DRAFT_1157 at 1177.990 kb on - strand, within EX28DRAFT_1157 at 1178.018 kb on + strand, within EX28DRAFT_1157 at 1178.093 kb on + strand, within EX28DRAFT_1157 at 1178.093 kb on + strand, within EX28DRAFT_1157 at 1178.379 kb on + strand, within EX28DRAFT_1157 at 1178.379 kb on + strand, within EX28DRAFT_1157 at 1178.441 kb on + strand, within EX28DRAFT_1157 at 1178.463 kb on + strand, within EX28DRAFT_1157 at 1178.464 kb on - strand, within EX28DRAFT_1157 at 1178.501 kb on + strand, within EX28DRAFT_1157 at 1178.513 kb on + strand, within EX28DRAFT_1157 at 1178.529 kb on + strand, within EX28DRAFT_1157 at 1178.536 kb on - strand, within EX28DRAFT_1157 at 1178.536 kb on - strand, within EX28DRAFT_1157 at 1178.536 kb on - strand, within EX28DRAFT_1157 at 1179.045 kb on - strand at 1179.045 kb on - strand at 1179.088 kb on + strand at 1179.094 kb on - strand at 1179.094 kb on - strand at 1179.113 kb on + strand at 1179.114 kb on - strand at 1179.114 kb on - strand at 1179.135 kb on + strand at 1179.387 kb on + strand, within EX28DRAFT_1158 at 1179.388 kb on - strand, within EX28DRAFT_1158 at 1179.388 kb on - strand, within EX28DRAFT_1158 at 1179.415 kb on + strand, within EX28DRAFT_1158 at 1179.416 kb on - strand, within EX28DRAFT_1158 at 1179.541 kb on + strand, within EX28DRAFT_1158 at 1179.541 kb on + strand, within EX28DRAFT_1158 at 1179.686 kb on - strand at 1179.773 kb on + strand at 1179.774 kb on - strand at 1179.896 kb on + strand at 1179.897 kb on - strand at 1179.897 kb on - strand at 1179.897 kb on - strand at 1180.110 kb on + strand, within EX28DRAFT_1159
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,176,117 + EX28DRAFT_1156 0.62 -0.5 1,176,303 - EX28DRAFT_1156 0.70 -0.3 1,176,393 + EX28DRAFT_1156 0.74 -0.4 1,176,414 + EX28DRAFT_1156 0.74 -0.6 1,176,464 + EX28DRAFT_1156 0.76 -0.3 1,176,559 - EX28DRAFT_1156 0.80 -0.8 1,176,560 - EX28DRAFT_1156 0.80 +1.0 1,176,578 + EX28DRAFT_1156 0.81 +1.6 1,176,579 - EX28DRAFT_1156 0.81 +0.1 1,176,579 - EX28DRAFT_1156 0.81 +0.2 1,176,908 + +0.1 1,177,021 + -0.3 1,177,021 + -0.6 1,177,074 - +0.5 1,177,076 + -0.3 1,177,076 + -0.1 1,177,076 + +0.1 1,177,076 + -3.6 1,177,076 + +0.1 1,177,076 + -1.1 1,177,076 + +0.6 1,177,076 + -0.2 1,177,077 - -0.5 1,177,077 - -0.1 1,177,118 + +0.2 1,177,119 - +0.3 1,177,119 - -0.1 1,177,122 + -0.8 1,177,123 - -0.1 1,177,236 + +0.5 1,177,236 + +0.5 1,177,238 + +0.6 1,177,239 - -0.0 1,177,261 - -0.4 1,177,291 - EX28DRAFT_1157 0.11 +0.2 1,177,291 - EX28DRAFT_1157 0.11 +0.3 1,177,368 + EX28DRAFT_1157 0.15 -0.7 1,177,447 + EX28DRAFT_1157 0.19 +0.2 1,177,447 + EX28DRAFT_1157 0.19 +0.3 1,177,567 - EX28DRAFT_1157 0.24 +1.5 1,177,666 - EX28DRAFT_1157 0.29 +0.2 1,177,806 + EX28DRAFT_1157 0.36 +0.2 1,177,807 - EX28DRAFT_1157 0.36 +0.5 1,177,890 + EX28DRAFT_1157 0.40 +0.4 1,177,891 - EX28DRAFT_1157 0.40 -0.6 1,177,938 - EX28DRAFT_1157 0.42 -0.6 1,177,953 + EX28DRAFT_1157 0.43 -0.2 1,177,953 + EX28DRAFT_1157 0.43 +0.9 1,177,953 + EX28DRAFT_1157 0.43 -0.1 1,177,953 + EX28DRAFT_1157 0.43 +0.1 1,177,954 - EX28DRAFT_1157 0.43 -0.0 1,177,954 - EX28DRAFT_1157 0.43 -1.4 1,177,954 - EX28DRAFT_1157 0.43 +0.2 1,177,954 - EX28DRAFT_1157 0.43 -0.5 1,177,954 - EX28DRAFT_1157 0.43 -0.0 1,177,960 - EX28DRAFT_1157 0.43 -0.2 1,177,990 - EX28DRAFT_1157 0.45 +0.1 1,178,018 + EX28DRAFT_1157 0.46 +0.2 1,178,093 + EX28DRAFT_1157 0.50 -0.6 1,178,093 + EX28DRAFT_1157 0.50 -0.5 1,178,379 + EX28DRAFT_1157 0.63 -0.3 1,178,379 + EX28DRAFT_1157 0.63 +0.1 1,178,441 + EX28DRAFT_1157 0.66 +0.4 1,178,463 + EX28DRAFT_1157 0.67 +0.4 1,178,464 - EX28DRAFT_1157 0.68 +1.2 1,178,501 + EX28DRAFT_1157 0.69 +1.0 1,178,513 + EX28DRAFT_1157 0.70 +0.7 1,178,529 + EX28DRAFT_1157 0.71 +0.2 1,178,536 - EX28DRAFT_1157 0.71 -0.4 1,178,536 - EX28DRAFT_1157 0.71 -0.1 1,178,536 - EX28DRAFT_1157 0.71 -0.2 1,179,045 - -0.1 1,179,045 - +0.5 1,179,088 + +0.1 1,179,094 - -0.5 1,179,094 - +0.6 1,179,113 + +0.5 1,179,114 - +1.1 1,179,114 - -0.4 1,179,135 + -0.2 1,179,387 + EX28DRAFT_1158 0.45 +0.5 1,179,388 - EX28DRAFT_1158 0.45 -0.7 1,179,388 - EX28DRAFT_1158 0.45 -0.3 1,179,415 + EX28DRAFT_1158 0.50 +0.3 1,179,416 - EX28DRAFT_1158 0.51 -0.1 1,179,541 + EX28DRAFT_1158 0.73 +0.3 1,179,541 + EX28DRAFT_1158 0.73 +0.7 1,179,686 - +0.3 1,179,773 + +0.6 1,179,774 - +0.9 1,179,896 + +0.2 1,179,897 - -0.1 1,179,897 - +0.2 1,179,897 - -0.1 1,180,110 + EX28DRAFT_1159 0.31 -0.3
Or see this region's nucleotide sequence