Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1140

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1138 and EX28DRAFT_1139 are separated by 11 nucleotidesEX28DRAFT_1139 and EX28DRAFT_1140 overlap by 4 nucleotidesEX28DRAFT_1140 and EX28DRAFT_1141 overlap by 16 nucleotides EX28DRAFT_1138: EX28DRAFT_1138 - Signal transduction histidine kinase, at 1,153,185 to 1,155,863 _1138 EX28DRAFT_1139: EX28DRAFT_1139 - hypothetical protein, at 1,155,875 to 1,156,300 _1139 EX28DRAFT_1140: EX28DRAFT_1140 - Protein of unknown function (DUF3131), at 1,156,297 to 1,157,691 _1140 EX28DRAFT_1141: EX28DRAFT_1141 - Protein of unknown function (DUF3131), at 1,157,676 to 1,159,223 _1141 Position (kb) 1156 1157 1158Strain fitness (log2 ratio) -2 -1 0 1at 1155.449 kb on + strand, within EX28DRAFT_1138at 1155.528 kb on - strand, within EX28DRAFT_1138at 1155.528 kb on - strand, within EX28DRAFT_1138at 1155.811 kb on + strandat 1155.812 kb on - strandat 1155.912 kb on + strandat 1155.912 kb on + strandat 1155.913 kb on - strandat 1156.089 kb on - strand, within EX28DRAFT_1139at 1156.199 kb on - strand, within EX28DRAFT_1139at 1156.215 kb on + strand, within EX28DRAFT_1139at 1156.216 kb on - strand, within EX28DRAFT_1139at 1156.216 kb on - strand, within EX28DRAFT_1139at 1156.312 kb on + strandat 1156.352 kb on + strandat 1156.352 kb on + strandat 1156.353 kb on - strandat 1156.353 kb on - strandat 1156.364 kb on - strandat 1156.379 kb on + strandat 1156.379 kb on + strandat 1156.704 kb on + strand, within EX28DRAFT_1140at 1156.705 kb on - strand, within EX28DRAFT_1140at 1156.875 kb on + strand, within EX28DRAFT_1140at 1156.875 kb on + strand, within EX28DRAFT_1140at 1156.875 kb on + strand, within EX28DRAFT_1140at 1156.876 kb on - strand, within EX28DRAFT_1140at 1156.878 kb on - strand, within EX28DRAFT_1140at 1156.878 kb on - strand, within EX28DRAFT_1140at 1157.151 kb on + strand, within EX28DRAFT_1140at 1157.168 kb on + strand, within EX28DRAFT_1140at 1157.369 kb on + strand, within EX28DRAFT_1140at 1157.714 kb on + strandat 1158.044 kb on - strand, within EX28DRAFT_1141at 1158.047 kb on - strand, within EX28DRAFT_1141at 1158.100 kb on + strand, within EX28DRAFT_1141at 1158.203 kb on - strand, within EX28DRAFT_1141at 1158.235 kb on + strand, within EX28DRAFT_1141at 1158.235 kb on + strand, within EX28DRAFT_1141at 1158.236 kb on - strand, within EX28DRAFT_1141at 1158.290 kb on + strand, within EX28DRAFT_1141at 1158.409 kb on + strand, within EX28DRAFT_1141at 1158.418 kb on + strand, within EX28DRAFT_1141at 1158.436 kb on + strand, within EX28DRAFT_1141at 1158.436 kb on + strand, within EX28DRAFT_1141at 1158.436 kb on + strand, within EX28DRAFT_1141at 1158.437 kb on - strand, within EX28DRAFT_1141at 1158.437 kb on - strand, within EX28DRAFT_1141at 1158.437 kb on - strand, within EX28DRAFT_1141at 1158.437 kb on - strand, within EX28DRAFT_1141at 1158.441 kb on - strand, within EX28DRAFT_1141at 1158.441 kb on - strand, within EX28DRAFT_1141at 1158.452 kb on + strand, within EX28DRAFT_1141at 1158.542 kb on + strand, within EX28DRAFT_1141at 1158.543 kb on - strand, within EX28DRAFT_1141at 1158.574 kb on + strand, within EX28DRAFT_1141at 1158.607 kb on + strand, within EX28DRAFT_1141at 1158.607 kb on + strand, within EX28DRAFT_1141at 1158.607 kb on + strand, within EX28DRAFT_1141at 1158.640 kb on + strand, within EX28DRAFT_1141

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,155,449 + EX28DRAFT_1138 0.85 -1.0
1,155,528 - EX28DRAFT_1138 0.87 +0.5
1,155,528 - EX28DRAFT_1138 0.87 -0.3
1,155,811 + +0.0
1,155,812 - -0.5
1,155,912 + +0.1
1,155,912 + -0.4
1,155,913 - +1.1
1,156,089 - EX28DRAFT_1139 0.50 +0.0
1,156,199 - EX28DRAFT_1139 0.76 -1.9
1,156,215 + EX28DRAFT_1139 0.80 +0.2
1,156,216 - EX28DRAFT_1139 0.80 -0.9
1,156,216 - EX28DRAFT_1139 0.80 +0.4
1,156,312 + +0.4
1,156,352 + +0.1
1,156,352 + -0.2
1,156,353 - -0.5
1,156,353 - -0.8
1,156,364 - -0.0
1,156,379 + -0.0
1,156,379 + -0.1
1,156,704 + EX28DRAFT_1140 0.29 -0.1
1,156,705 - EX28DRAFT_1140 0.29 -0.2
1,156,875 + EX28DRAFT_1140 0.41 -0.9
1,156,875 + EX28DRAFT_1140 0.41 -0.4
1,156,875 + EX28DRAFT_1140 0.41 +1.0
1,156,876 - EX28DRAFT_1140 0.42 -0.2
1,156,878 - EX28DRAFT_1140 0.42 -0.8
1,156,878 - EX28DRAFT_1140 0.42 -1.3
1,157,151 + EX28DRAFT_1140 0.61 +0.5
1,157,168 + EX28DRAFT_1140 0.62 -0.1
1,157,369 + EX28DRAFT_1140 0.77 +0.0
1,157,714 + +0.5
1,158,044 - EX28DRAFT_1141 0.24 -0.6
1,158,047 - EX28DRAFT_1141 0.24 +0.6
1,158,100 + EX28DRAFT_1141 0.27 +0.5
1,158,203 - EX28DRAFT_1141 0.34 +0.1
1,158,235 + EX28DRAFT_1141 0.36 -0.3
1,158,235 + EX28DRAFT_1141 0.36 -0.4
1,158,236 - EX28DRAFT_1141 0.36 +0.0
1,158,290 + EX28DRAFT_1141 0.40 +0.4
1,158,409 + EX28DRAFT_1141 0.47 +0.5
1,158,418 + EX28DRAFT_1141 0.48 +0.3
1,158,436 + EX28DRAFT_1141 0.49 -0.2
1,158,436 + EX28DRAFT_1141 0.49 +0.3
1,158,436 + EX28DRAFT_1141 0.49 -0.2
1,158,437 - EX28DRAFT_1141 0.49 +0.5
1,158,437 - EX28DRAFT_1141 0.49 -0.6
1,158,437 - EX28DRAFT_1141 0.49 -0.9
1,158,437 - EX28DRAFT_1141 0.49 -1.3
1,158,441 - EX28DRAFT_1141 0.49 -0.2
1,158,441 - EX28DRAFT_1141 0.49 -0.1
1,158,452 + EX28DRAFT_1141 0.50 +0.3
1,158,542 + EX28DRAFT_1141 0.56 +0.7
1,158,543 - EX28DRAFT_1141 0.56 +0.4
1,158,574 + EX28DRAFT_1141 0.58 +0.5
1,158,607 + EX28DRAFT_1141 0.60 +1.2
1,158,607 + EX28DRAFT_1141 0.60 -0.2
1,158,607 + EX28DRAFT_1141 0.60 -0.1
1,158,640 + EX28DRAFT_1141 0.62 +1.5

Or see this region's nucleotide sequence