Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1108 and EX28DRAFT_1109 are separated by 114 nucleotides EX28DRAFT_1109 and EX28DRAFT_1110 are separated by 23 nucleotides EX28DRAFT_1110 and EX28DRAFT_1111 are separated by 133 nucleotides EX28DRAFT_1111 and EX28DRAFT_1112 overlap by 4 nucleotides
EX28DRAFT_1108: EX28DRAFT_1108 - hypothetical protein, at 1,121,223 to 1,122,182
_1108
EX28DRAFT_1109: EX28DRAFT_1109 - peroxiredoxin, OsmC subfamily, at 1,122,297 to 1,122,725
_1109
EX28DRAFT_1110: EX28DRAFT_1110 - Transcriptional regulator, at 1,122,749 to 1,123,654
_1110
EX28DRAFT_1111: EX28DRAFT_1111 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,123,788 to 1,124,537
_1111
EX28DRAFT_1112: EX28DRAFT_1112 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 1,124,534 to 1,125,463
_1112
Position (kb)
1122
1123
1124 Strain fitness (log2 ratio)
-1
0
1
2 at 1121.881 kb on + strand, within EX28DRAFT_1108 at 1121.921 kb on + strand, within EX28DRAFT_1108 at 1121.921 kb on + strand, within EX28DRAFT_1108 at 1121.922 kb on - strand, within EX28DRAFT_1108 at 1121.922 kb on - strand, within EX28DRAFT_1108 at 1121.983 kb on + strand, within EX28DRAFT_1108 at 1121.983 kb on + strand, within EX28DRAFT_1108 at 1121.983 kb on + strand, within EX28DRAFT_1108 at 1121.984 kb on - strand, within EX28DRAFT_1108 at 1122.092 kb on + strand at 1122.093 kb on - strand at 1122.094 kb on + strand at 1122.095 kb on - strand at 1122.095 kb on - strand at 1122.095 kb on - strand at 1122.095 kb on - strand at 1122.095 kb on - strand at 1122.098 kb on + strand at 1122.098 kb on + strand at 1122.099 kb on - strand at 1122.183 kb on - strand at 1122.255 kb on + strand at 1122.255 kb on + strand at 1122.255 kb on + strand at 1122.256 kb on - strand at 1122.260 kb on + strand at 1122.261 kb on - strand at 1122.261 kb on - strand at 1122.261 kb on - strand at 1122.262 kb on + strand at 1122.262 kb on + strand at 1122.262 kb on + strand at 1122.263 kb on - strand at 1122.263 kb on - strand at 1122.263 kb on - strand at 1122.263 kb on - strand at 1122.263 kb on - strand at 1122.266 kb on + strand at 1122.266 kb on + strand at 1122.267 kb on - strand at 1122.302 kb on + strand at 1122.302 kb on + strand at 1122.302 kb on + strand at 1122.342 kb on - strand, within EX28DRAFT_1109 at 1122.534 kb on - strand, within EX28DRAFT_1109 at 1122.648 kb on - strand, within EX28DRAFT_1109 at 1122.711 kb on + strand at 1122.711 kb on + strand at 1122.711 kb on + strand at 1122.712 kb on - strand at 1122.713 kb on + strand at 1122.720 kb on - strand at 1122.723 kb on + strand at 1122.724 kb on - strand at 1122.724 kb on - strand at 1122.793 kb on + strand at 1122.794 kb on - strand at 1122.794 kb on - strand at 1122.794 kb on - strand at 1122.802 kb on + strand at 1122.976 kb on + strand, within EX28DRAFT_1110 at 1122.977 kb on - strand, within EX28DRAFT_1110 at 1122.996 kb on + strand, within EX28DRAFT_1110 at 1122.996 kb on + strand, within EX28DRAFT_1110 at 1122.996 kb on + strand, within EX28DRAFT_1110 at 1123.077 kb on + strand, within EX28DRAFT_1110 at 1123.078 kb on - strand, within EX28DRAFT_1110 at 1123.082 kb on - strand, within EX28DRAFT_1110 at 1123.238 kb on + strand, within EX28DRAFT_1110 at 1123.239 kb on - strand, within EX28DRAFT_1110 at 1123.313 kb on - strand, within EX28DRAFT_1110 at 1123.462 kb on - strand, within EX28DRAFT_1110 at 1123.462 kb on - strand, within EX28DRAFT_1110 at 1123.518 kb on - strand, within EX28DRAFT_1110 at 1123.573 kb on + strand at 1123.597 kb on + strand at 1123.781 kb on - strand at 1123.781 kb on - strand at 1123.890 kb on + strand, within EX28DRAFT_1111 at 1123.891 kb on - strand, within EX28DRAFT_1111 at 1123.919 kb on - strand, within EX28DRAFT_1111
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,121,881 + EX28DRAFT_1108 0.69 +0.8 1,121,921 + EX28DRAFT_1108 0.73 -0.0 1,121,921 + EX28DRAFT_1108 0.73 +0.0 1,121,922 - EX28DRAFT_1108 0.73 -1.3 1,121,922 - EX28DRAFT_1108 0.73 +0.3 1,121,983 + EX28DRAFT_1108 0.79 -0.8 1,121,983 + EX28DRAFT_1108 0.79 +0.2 1,121,983 + EX28DRAFT_1108 0.79 -0.6 1,121,984 - EX28DRAFT_1108 0.79 -0.4 1,122,092 + -0.2 1,122,093 - +1.4 1,122,094 + -0.1 1,122,095 - -0.6 1,122,095 - +0.4 1,122,095 - -0.3 1,122,095 - -0.4 1,122,095 - -0.1 1,122,098 + -0.5 1,122,098 + +0.1 1,122,099 - -1.7 1,122,183 - +0.4 1,122,255 + +0.2 1,122,255 + +0.5 1,122,255 + +0.2 1,122,256 - -1.3 1,122,260 + +0.3 1,122,261 - +0.5 1,122,261 - -0.5 1,122,261 - -0.4 1,122,262 + +0.4 1,122,262 + +0.3 1,122,262 + -0.4 1,122,263 - -0.2 1,122,263 - +0.3 1,122,263 - -0.3 1,122,263 - -0.5 1,122,263 - +0.3 1,122,266 + +0.5 1,122,266 + -1.0 1,122,267 - +0.7 1,122,302 + -0.5 1,122,302 + -0.2 1,122,302 + +0.1 1,122,342 - EX28DRAFT_1109 0.10 +0.9 1,122,534 - EX28DRAFT_1109 0.55 -0.6 1,122,648 - EX28DRAFT_1109 0.82 -0.1 1,122,711 + -0.3 1,122,711 + -0.1 1,122,711 + +0.6 1,122,712 - +0.6 1,122,713 + +0.4 1,122,720 - +0.4 1,122,723 + +0.4 1,122,724 - +0.4 1,122,724 - -0.1 1,122,793 + +0.6 1,122,794 - +0.2 1,122,794 - +0.3 1,122,794 - +0.1 1,122,802 + -0.3 1,122,976 + EX28DRAFT_1110 0.25 +0.4 1,122,977 - EX28DRAFT_1110 0.25 -0.6 1,122,996 + EX28DRAFT_1110 0.27 -0.2 1,122,996 + EX28DRAFT_1110 0.27 -0.1 1,122,996 + EX28DRAFT_1110 0.27 +1.8 1,123,077 + EX28DRAFT_1110 0.36 -0.4 1,123,078 - EX28DRAFT_1110 0.36 +0.1 1,123,082 - EX28DRAFT_1110 0.37 +0.4 1,123,238 + EX28DRAFT_1110 0.54 +0.5 1,123,239 - EX28DRAFT_1110 0.54 +1.3 1,123,313 - EX28DRAFT_1110 0.62 +1.1 1,123,462 - EX28DRAFT_1110 0.79 +0.8 1,123,462 - EX28DRAFT_1110 0.79 -0.6 1,123,518 - EX28DRAFT_1110 0.85 -0.1 1,123,573 + -0.2 1,123,597 + -0.1 1,123,781 - -0.4 1,123,781 - -0.3 1,123,890 + EX28DRAFT_1111 0.14 -0.1 1,123,891 - EX28DRAFT_1111 0.14 +0.2 1,123,919 - EX28DRAFT_1111 0.17 +0.1
Or see this region's nucleotide sequence