Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1103

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1102 and EX28DRAFT_1103 are separated by 424 nucleotidesEX28DRAFT_1103 and EX28DRAFT_1104 are separated by 176 nucleotidesEX28DRAFT_1104 and EX28DRAFT_1105 are separated by 95 nucleotidesEX28DRAFT_1105 and EX28DRAFT_1106 are separated by 232 nucleotides EX28DRAFT_1102: EX28DRAFT_1102 - ATPase components of ABC transporters with duplicated ATPase domains, at 1,114,686 to 1,116,398 _1102 EX28DRAFT_1103: EX28DRAFT_1103 - Malic enzyme, at 1,116,823 to 1,118,520 _1103 EX28DRAFT_1104: EX28DRAFT_1104 - 30S ribosomal protein subunit S22 family, at 1,118,697 to 1,118,834 _1104 EX28DRAFT_1105: EX28DRAFT_1105 - Putative biofilm-dependent modulation protein, at 1,118,930 to 1,119,145 _1105 EX28DRAFT_1106: EX28DRAFT_1106 - Zn-dependent hydrolases, including glyoxylases, at 1,119,378 to 1,120,229 _1106 Position (kb) 1116 1117 1118 1119Strain fitness (log2 ratio) -2 -1 0 1 2at 1115.918 kb on + strand, within EX28DRAFT_1102at 1115.919 kb on - strand, within EX28DRAFT_1102at 1116.323 kb on + strandat 1116.388 kb on - strandat 1116.417 kb on + strandat 1116.455 kb on + strandat 1116.515 kb on + strandat 1116.591 kb on - strandat 1116.598 kb on - strandat 1116.610 kb on + strandat 1116.610 kb on + strandat 1116.610 kb on + strandat 1116.610 kb on + strandat 1116.611 kb on - strandat 1116.611 kb on - strandat 1116.613 kb on - strandat 1116.613 kb on - strandat 1116.614 kb on + strandat 1116.614 kb on + strandat 1116.622 kb on - strandat 1116.675 kb on - strandat 1116.825 kb on - strandat 1116.846 kb on + strandat 1116.846 kb on + strandat 1116.846 kb on + strandat 1116.847 kb on - strandat 1117.127 kb on + strand, within EX28DRAFT_1103at 1117.127 kb on + strand, within EX28DRAFT_1103at 1117.127 kb on + strand, within EX28DRAFT_1103at 1117.127 kb on + strand, within EX28DRAFT_1103at 1117.128 kb on - strand, within EX28DRAFT_1103at 1117.128 kb on - strand, within EX28DRAFT_1103at 1117.552 kb on + strand, within EX28DRAFT_1103at 1117.579 kb on - strand, within EX28DRAFT_1103at 1117.579 kb on - strand, within EX28DRAFT_1103at 1117.680 kb on + strand, within EX28DRAFT_1103at 1117.681 kb on - strand, within EX28DRAFT_1103at 1117.684 kb on + strand, within EX28DRAFT_1103at 1117.685 kb on - strand, within EX28DRAFT_1103at 1117.850 kb on + strand, within EX28DRAFT_1103at 1117.853 kb on + strand, within EX28DRAFT_1103at 1117.893 kb on - strand, within EX28DRAFT_1103at 1117.893 kb on - strand, within EX28DRAFT_1103at 1117.955 kb on + strand, within EX28DRAFT_1103at 1117.956 kb on - strand, within EX28DRAFT_1103at 1118.050 kb on - strand, within EX28DRAFT_1103at 1118.165 kb on + strand, within EX28DRAFT_1103at 1118.166 kb on - strand, within EX28DRAFT_1103at 1118.211 kb on - strand, within EX28DRAFT_1103at 1118.255 kb on + strand, within EX28DRAFT_1103at 1118.255 kb on + strand, within EX28DRAFT_1103at 1118.486 kb on + strandat 1118.486 kb on + strandat 1118.486 kb on + strandat 1118.486 kb on + strandat 1118.486 kb on + strandat 1118.487 kb on - strandat 1118.487 kb on - strandat 1118.487 kb on - strandat 1118.489 kb on - strandat 1118.606 kb on + strandat 1118.609 kb on + strandat 1118.610 kb on - strandat 1118.610 kb on - strandat 1118.610 kb on - strandat 1118.628 kb on - strandat 1118.643 kb on + strandat 1118.686 kb on + strandat 1118.699 kb on - strandat 1118.771 kb on + strand, within EX28DRAFT_1104at 1118.796 kb on - strand, within EX28DRAFT_1104at 1118.837 kb on + strandat 1118.838 kb on - strandat 1118.857 kb on + strandat 1118.895 kb on - strandat 1118.895 kb on - strandat 1118.902 kb on + strandat 1118.921 kb on - strandat 1118.962 kb on - strand, within EX28DRAFT_1105at 1118.962 kb on - strand, within EX28DRAFT_1105at 1118.965 kb on + strand, within EX28DRAFT_1105at 1118.966 kb on - strand, within EX28DRAFT_1105at 1118.966 kb on - strand, within EX28DRAFT_1105at 1118.966 kb on - strand, within EX28DRAFT_1105at 1118.966 kb on - strand, within EX28DRAFT_1105at 1118.966 kb on - strand, within EX28DRAFT_1105at 1118.979 kb on + strand, within EX28DRAFT_1105at 1118.979 kb on + strand, within EX28DRAFT_1105at 1118.980 kb on - strand, within EX28DRAFT_1105at 1119.121 kb on + strand, within EX28DRAFT_1105at 1119.121 kb on + strand, within EX28DRAFT_1105at 1119.122 kb on - strand, within EX28DRAFT_1105at 1119.122 kb on - strand, within EX28DRAFT_1105at 1119.140 kb on - strandat 1119.171 kb on - strandat 1119.414 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,115,918 + EX28DRAFT_1102 0.72 -0.5
1,115,919 - EX28DRAFT_1102 0.72 +0.2
1,116,323 + +0.4
1,116,388 - +0.2
1,116,417 + -0.4
1,116,455 + -0.2
1,116,515 + -0.3
1,116,591 - -0.5
1,116,598 - +0.6
1,116,610 + +0.5
1,116,610 + +0.4
1,116,610 + -1.2
1,116,610 + -2.0
1,116,611 - -0.3
1,116,611 - -1.5
1,116,613 - +0.2
1,116,613 - +0.3
1,116,614 + +0.1
1,116,614 + -0.0
1,116,622 - +0.6
1,116,675 - -0.1
1,116,825 - +0.3
1,116,846 + -1.8
1,116,846 + -0.0
1,116,846 + +0.6
1,116,847 - +0.1
1,117,127 + EX28DRAFT_1103 0.18 -0.5
1,117,127 + EX28DRAFT_1103 0.18 -1.0
1,117,127 + EX28DRAFT_1103 0.18 -0.5
1,117,127 + EX28DRAFT_1103 0.18 -0.2
1,117,128 - EX28DRAFT_1103 0.18 -0.2
1,117,128 - EX28DRAFT_1103 0.18 +0.8
1,117,552 + EX28DRAFT_1103 0.43 +2.0
1,117,579 - EX28DRAFT_1103 0.45 -0.1
1,117,579 - EX28DRAFT_1103 0.45 -1.3
1,117,680 + EX28DRAFT_1103 0.50 -0.3
1,117,681 - EX28DRAFT_1103 0.51 +0.4
1,117,684 + EX28DRAFT_1103 0.51 -0.2
1,117,685 - EX28DRAFT_1103 0.51 -1.6
1,117,850 + EX28DRAFT_1103 0.60 +0.3
1,117,853 + EX28DRAFT_1103 0.61 -0.7
1,117,893 - EX28DRAFT_1103 0.63 +0.1
1,117,893 - EX28DRAFT_1103 0.63 +0.3
1,117,955 + EX28DRAFT_1103 0.67 -0.0
1,117,956 - EX28DRAFT_1103 0.67 +0.3
1,118,050 - EX28DRAFT_1103 0.72 +0.3
1,118,165 + EX28DRAFT_1103 0.79 -1.1
1,118,166 - EX28DRAFT_1103 0.79 -0.4
1,118,211 - EX28DRAFT_1103 0.82 -0.7
1,118,255 + EX28DRAFT_1103 0.84 -0.5
1,118,255 + EX28DRAFT_1103 0.84 +0.1
1,118,486 + +0.1
1,118,486 + +0.0
1,118,486 + +0.1
1,118,486 + -0.8
1,118,486 + +0.7
1,118,487 - +0.3
1,118,487 - +0.4
1,118,487 - -0.9
1,118,489 - -0.3
1,118,606 + -0.2
1,118,609 + -0.4
1,118,610 - -1.7
1,118,610 - +2.2
1,118,610 - -1.0
1,118,628 - +0.0
1,118,643 + -0.3
1,118,686 + -0.7
1,118,699 - -1.2
1,118,771 + EX28DRAFT_1104 0.54 +2.0
1,118,796 - EX28DRAFT_1104 0.72 -1.2
1,118,837 + +0.1
1,118,838 - -0.7
1,118,857 + +0.3
1,118,895 - -1.1
1,118,895 - -0.4
1,118,902 + -0.1
1,118,921 - +0.2
1,118,962 - EX28DRAFT_1105 0.15 +0.5
1,118,962 - EX28DRAFT_1105 0.15 +0.2
1,118,965 + EX28DRAFT_1105 0.16 -2.3
1,118,966 - EX28DRAFT_1105 0.17 -0.3
1,118,966 - EX28DRAFT_1105 0.17 +0.4
1,118,966 - EX28DRAFT_1105 0.17 -0.4
1,118,966 - EX28DRAFT_1105 0.17 -0.2
1,118,966 - EX28DRAFT_1105 0.17 +0.0
1,118,979 + EX28DRAFT_1105 0.23 -1.0
1,118,979 + EX28DRAFT_1105 0.23 -0.2
1,118,980 - EX28DRAFT_1105 0.23 -0.2
1,119,121 + EX28DRAFT_1105 0.88 -0.8
1,119,121 + EX28DRAFT_1105 0.88 -0.6
1,119,122 - EX28DRAFT_1105 0.89 -0.2
1,119,122 - EX28DRAFT_1105 0.89 +0.2
1,119,140 - +0.1
1,119,171 - -0.1
1,119,414 + +0.3

Or see this region's nucleotide sequence