Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1096 and EX28DRAFT_1097 overlap by 4 nucleotides EX28DRAFT_1097 and EX28DRAFT_1098 are separated by 10 nucleotides EX28DRAFT_1098 and EX28DRAFT_1099 are separated by 143 nucleotides
EX28DRAFT_1096: EX28DRAFT_1096 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 1,108,031 to 1,108,879
_1096
EX28DRAFT_1097: EX28DRAFT_1097 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 1,108,876 to 1,109,820
_1097
EX28DRAFT_1098: EX28DRAFT_1098 - ABC transporter substrate binding protein, KPN_01854 family, at 1,109,831 to 1,111,450
_1098
EX28DRAFT_1099: EX28DRAFT_1099 - NADH dehydrogenase, FAD-containing subunit, at 1,111,594 to 1,112,796
_1099
Position (kb)
1109
1110
1111
1112 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1108.863 kb on + strand at 1108.993 kb on + strand, within EX28DRAFT_1097 at 1108.994 kb on - strand, within EX28DRAFT_1097 at 1109.395 kb on - strand, within EX28DRAFT_1097 at 1109.422 kb on - strand, within EX28DRAFT_1097 at 1109.422 kb on - strand, within EX28DRAFT_1097 at 1109.648 kb on + strand, within EX28DRAFT_1097 at 1109.683 kb on + strand, within EX28DRAFT_1097 at 1109.949 kb on + strand at 1109.950 kb on - strand at 1109.967 kb on + strand at 1110.318 kb on + strand, within EX28DRAFT_1098 at 1110.318 kb on + strand, within EX28DRAFT_1098 at 1110.319 kb on - strand, within EX28DRAFT_1098 at 1110.319 kb on - strand, within EX28DRAFT_1098 at 1110.319 kb on - strand, within EX28DRAFT_1098 at 1110.630 kb on + strand, within EX28DRAFT_1098 at 1110.638 kb on - strand, within EX28DRAFT_1098 at 1110.638 kb on - strand, within EX28DRAFT_1098 at 1110.640 kb on - strand, within EX28DRAFT_1098 at 1110.653 kb on - strand, within EX28DRAFT_1098 at 1110.670 kb on - strand, within EX28DRAFT_1098 at 1110.863 kb on + strand, within EX28DRAFT_1098 at 1110.923 kb on - strand, within EX28DRAFT_1098 at 1111.000 kb on - strand, within EX28DRAFT_1098 at 1111.041 kb on + strand, within EX28DRAFT_1098 at 1111.041 kb on + strand, within EX28DRAFT_1098 at 1111.042 kb on - strand, within EX28DRAFT_1098 at 1111.045 kb on + strand, within EX28DRAFT_1098 at 1111.045 kb on + strand, within EX28DRAFT_1098 at 1111.046 kb on - strand, within EX28DRAFT_1098 at 1111.046 kb on - strand, within EX28DRAFT_1098 at 1111.046 kb on - strand, within EX28DRAFT_1098 at 1111.081 kb on + strand, within EX28DRAFT_1098 at 1111.095 kb on + strand, within EX28DRAFT_1098 at 1111.096 kb on - strand, within EX28DRAFT_1098 at 1111.179 kb on + strand, within EX28DRAFT_1098 at 1111.180 kb on - strand, within EX28DRAFT_1098 at 1111.467 kb on - strand at 1111.528 kb on + strand at 1111.529 kb on - strand at 1111.529 kb on - strand at 1111.741 kb on - strand, within EX28DRAFT_1099 at 1111.776 kb on + strand, within EX28DRAFT_1099 at 1111.777 kb on - strand, within EX28DRAFT_1099 at 1111.781 kb on + strand, within EX28DRAFT_1099 at 1111.781 kb on + strand, within EX28DRAFT_1099 at 1111.782 kb on - strand, within EX28DRAFT_1099 at 1111.782 kb on - strand, within EX28DRAFT_1099 at 1111.782 kb on - strand, within EX28DRAFT_1099 at 1111.937 kb on + strand, within EX28DRAFT_1099 at 1111.937 kb on + strand, within EX28DRAFT_1099 at 1111.937 kb on + strand, within EX28DRAFT_1099 at 1111.937 kb on + strand, within EX28DRAFT_1099 at 1111.937 kb on + strand, within EX28DRAFT_1099 at 1111.938 kb on - strand, within EX28DRAFT_1099 at 1111.938 kb on - strand, within EX28DRAFT_1099 at 1111.938 kb on - strand, within EX28DRAFT_1099 at 1111.938 kb on - strand, within EX28DRAFT_1099 at 1111.938 kb on - strand, within EX28DRAFT_1099 at 1111.938 kb on - strand, within EX28DRAFT_1099 at 1111.938 kb on - strand, within EX28DRAFT_1099 at 1111.938 kb on - strand, within EX28DRAFT_1099 at 1111.980 kb on + strand, within EX28DRAFT_1099 at 1111.980 kb on + strand, within EX28DRAFT_1099 at 1112.073 kb on + strand, within EX28DRAFT_1099 at 1112.131 kb on - strand, within EX28DRAFT_1099
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,108,863 + -0.2 1,108,993 + EX28DRAFT_1097 0.12 -0.0 1,108,994 - EX28DRAFT_1097 0.12 +0.3 1,109,395 - EX28DRAFT_1097 0.55 +0.1 1,109,422 - EX28DRAFT_1097 0.58 -1.1 1,109,422 - EX28DRAFT_1097 0.58 -0.7 1,109,648 + EX28DRAFT_1097 0.82 +1.8 1,109,683 + EX28DRAFT_1097 0.85 -0.0 1,109,949 + +0.5 1,109,950 - +0.9 1,109,967 + -0.1 1,110,318 + EX28DRAFT_1098 0.30 +0.7 1,110,318 + EX28DRAFT_1098 0.30 +0.4 1,110,319 - EX28DRAFT_1098 0.30 -0.6 1,110,319 - EX28DRAFT_1098 0.30 +0.1 1,110,319 - EX28DRAFT_1098 0.30 +0.0 1,110,630 + EX28DRAFT_1098 0.49 -0.1 1,110,638 - EX28DRAFT_1098 0.50 -0.5 1,110,638 - EX28DRAFT_1098 0.50 -0.0 1,110,640 - EX28DRAFT_1098 0.50 +1.0 1,110,653 - EX28DRAFT_1098 0.51 +0.2 1,110,670 - EX28DRAFT_1098 0.52 +0.1 1,110,863 + EX28DRAFT_1098 0.64 -0.4 1,110,923 - EX28DRAFT_1098 0.67 +1.6 1,111,000 - EX28DRAFT_1098 0.72 -0.6 1,111,041 + EX28DRAFT_1098 0.75 -0.4 1,111,041 + EX28DRAFT_1098 0.75 +0.1 1,111,042 - EX28DRAFT_1098 0.75 -0.7 1,111,045 + EX28DRAFT_1098 0.75 +3.8 1,111,045 + EX28DRAFT_1098 0.75 +0.2 1,111,046 - EX28DRAFT_1098 0.75 +0.2 1,111,046 - EX28DRAFT_1098 0.75 -0.4 1,111,046 - EX28DRAFT_1098 0.75 -0.0 1,111,081 + EX28DRAFT_1098 0.77 +2.6 1,111,095 + EX28DRAFT_1098 0.78 -0.1 1,111,096 - EX28DRAFT_1098 0.78 +0.1 1,111,179 + EX28DRAFT_1098 0.83 -1.1 1,111,180 - EX28DRAFT_1098 0.83 -0.1 1,111,467 - +0.4 1,111,528 + +0.6 1,111,529 - +0.3 1,111,529 - -0.1 1,111,741 - EX28DRAFT_1099 0.12 -1.1 1,111,776 + EX28DRAFT_1099 0.15 -0.1 1,111,777 - EX28DRAFT_1099 0.15 -0.1 1,111,781 + EX28DRAFT_1099 0.16 +0.1 1,111,781 + EX28DRAFT_1099 0.16 +0.4 1,111,782 - EX28DRAFT_1099 0.16 -0.3 1,111,782 - EX28DRAFT_1099 0.16 +0.5 1,111,782 - EX28DRAFT_1099 0.16 -0.1 1,111,937 + EX28DRAFT_1099 0.29 +0.5 1,111,937 + EX28DRAFT_1099 0.29 -0.1 1,111,937 + EX28DRAFT_1099 0.29 +0.1 1,111,937 + EX28DRAFT_1099 0.29 +1.0 1,111,937 + EX28DRAFT_1099 0.29 +2.3 1,111,938 - EX28DRAFT_1099 0.29 +0.2 1,111,938 - EX28DRAFT_1099 0.29 -0.2 1,111,938 - EX28DRAFT_1099 0.29 -0.2 1,111,938 - EX28DRAFT_1099 0.29 -0.1 1,111,938 - EX28DRAFT_1099 0.29 +1.8 1,111,938 - EX28DRAFT_1099 0.29 +1.4 1,111,938 - EX28DRAFT_1099 0.29 +0.3 1,111,938 - EX28DRAFT_1099 0.29 -0.3 1,111,980 + EX28DRAFT_1099 0.32 +0.3 1,111,980 + EX28DRAFT_1099 0.32 +0.8 1,112,073 + EX28DRAFT_1099 0.40 +0.2 1,112,131 - EX28DRAFT_1099 0.45 -0.2
Or see this region's nucleotide sequence