Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1063 and EX28DRAFT_1064 are separated by 121 nucleotides EX28DRAFT_1064 and EX28DRAFT_1065 overlap by 8 nucleotides EX28DRAFT_1065 and EX28DRAFT_1066 are separated by 160 nucleotides
EX28DRAFT_1063: EX28DRAFT_1063 - Na+/citrate symporter, at 1,074,409 to 1,075,740
_1063
EX28DRAFT_1064: EX28DRAFT_1064 - Helix-turn-helix domain, at 1,075,862 to 1,076,503
_1064
EX28DRAFT_1065: EX28DRAFT_1065 - Predicted transcriptional regulators, at 1,076,496 to 1,076,795
_1065
EX28DRAFT_1066: EX28DRAFT_1066 - translation elongation factor EF-G, at 1,076,956 to 1,079,055
_1066
Position (kb)
1075
1076
1077 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1074.914 kb on - strand, within EX28DRAFT_1063 at 1074.914 kb on - strand, within EX28DRAFT_1063 at 1074.916 kb on - strand, within EX28DRAFT_1063 at 1074.916 kb on - strand, within EX28DRAFT_1063 at 1074.948 kb on - strand, within EX28DRAFT_1063 at 1075.034 kb on - strand, within EX28DRAFT_1063 at 1075.034 kb on - strand, within EX28DRAFT_1063 at 1075.072 kb on - strand, within EX28DRAFT_1063 at 1075.084 kb on - strand, within EX28DRAFT_1063 at 1075.329 kb on + strand, within EX28DRAFT_1063 at 1075.333 kb on + strand, within EX28DRAFT_1063 at 1075.384 kb on - strand, within EX28DRAFT_1063 at 1075.436 kb on + strand, within EX28DRAFT_1063 at 1075.438 kb on + strand, within EX28DRAFT_1063 at 1075.438 kb on + strand, within EX28DRAFT_1063 at 1075.438 kb on + strand, within EX28DRAFT_1063 at 1075.438 kb on + strand, within EX28DRAFT_1063 at 1075.439 kb on - strand, within EX28DRAFT_1063 at 1075.439 kb on - strand, within EX28DRAFT_1063 at 1075.439 kb on - strand, within EX28DRAFT_1063 at 1075.439 kb on - strand, within EX28DRAFT_1063 at 1075.551 kb on + strand, within EX28DRAFT_1063 at 1075.551 kb on + strand, within EX28DRAFT_1063 at 1075.551 kb on + strand, within EX28DRAFT_1063 at 1075.551 kb on + strand, within EX28DRAFT_1063 at 1075.555 kb on + strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.807 kb on - strand at 1075.807 kb on - strand at 1075.823 kb on + strand at 1075.823 kb on + strand at 1075.826 kb on - strand at 1075.826 kb on - strand at 1075.895 kb on + strand at 1075.896 kb on - strand at 1075.896 kb on - strand at 1076.021 kb on + strand, within EX28DRAFT_1064 at 1076.080 kb on - strand, within EX28DRAFT_1064 at 1076.153 kb on + strand, within EX28DRAFT_1064 at 1076.154 kb on - strand, within EX28DRAFT_1064 at 1076.194 kb on + strand, within EX28DRAFT_1064 at 1076.198 kb on + strand, within EX28DRAFT_1064 at 1076.198 kb on + strand, within EX28DRAFT_1064 at 1076.199 kb on - strand, within EX28DRAFT_1064 at 1076.199 kb on - strand, within EX28DRAFT_1064 at 1076.242 kb on + strand, within EX28DRAFT_1064 at 1076.243 kb on - strand, within EX28DRAFT_1064 at 1076.243 kb on - strand, within EX28DRAFT_1064 at 1076.255 kb on + strand, within EX28DRAFT_1064 at 1076.514 kb on + strand at 1076.514 kb on + strand at 1076.653 kb on - strand, within EX28DRAFT_1065 at 1076.653 kb on - strand, within EX28DRAFT_1065 at 1076.763 kb on + strand, within EX28DRAFT_1065 at 1076.827 kb on - strand at 1076.857 kb on - strand at 1076.952 kb on + strand at 1077.053 kb on - strand at 1077.083 kb on + strand at 1077.084 kb on - strand at 1077.190 kb on + strand, within EX28DRAFT_1066 at 1077.292 kb on + strand, within EX28DRAFT_1066 at 1077.293 kb on - strand, within EX28DRAFT_1066 at 1077.293 kb on - strand, within EX28DRAFT_1066 at 1077.293 kb on - strand, within EX28DRAFT_1066 at 1077.293 kb on - strand, within EX28DRAFT_1066 at 1077.293 kb on - strand, within EX28DRAFT_1066 at 1077.348 kb on + strand, within EX28DRAFT_1066 at 1077.349 kb on - strand, within EX28DRAFT_1066
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,074,914 - EX28DRAFT_1063 0.38 -0.2 1,074,914 - EX28DRAFT_1063 0.38 -0.1 1,074,916 - EX28DRAFT_1063 0.38 -0.9 1,074,916 - EX28DRAFT_1063 0.38 -0.3 1,074,948 - EX28DRAFT_1063 0.40 +0.9 1,075,034 - EX28DRAFT_1063 0.47 -1.6 1,075,034 - EX28DRAFT_1063 0.47 -0.1 1,075,072 - EX28DRAFT_1063 0.50 -0.1 1,075,084 - EX28DRAFT_1063 0.51 -0.1 1,075,329 + EX28DRAFT_1063 0.69 +0.3 1,075,333 + EX28DRAFT_1063 0.69 +0.0 1,075,384 - EX28DRAFT_1063 0.73 -0.8 1,075,436 + EX28DRAFT_1063 0.77 +0.0 1,075,438 + EX28DRAFT_1063 0.77 -0.1 1,075,438 + EX28DRAFT_1063 0.77 +0.2 1,075,438 + EX28DRAFT_1063 0.77 +2.9 1,075,438 + EX28DRAFT_1063 0.77 -0.7 1,075,439 - EX28DRAFT_1063 0.77 +0.4 1,075,439 - EX28DRAFT_1063 0.77 +0.7 1,075,439 - EX28DRAFT_1063 0.77 +0.5 1,075,439 - EX28DRAFT_1063 0.77 -0.0 1,075,551 + EX28DRAFT_1063 0.86 -0.1 1,075,551 + EX28DRAFT_1063 0.86 +0.1 1,075,551 + EX28DRAFT_1063 0.86 +0.2 1,075,551 + EX28DRAFT_1063 0.86 +0.4 1,075,555 + EX28DRAFT_1063 0.86 +0.8 1,075,556 - EX28DRAFT_1063 0.86 -1.5 1,075,556 - EX28DRAFT_1063 0.86 -0.3 1,075,556 - EX28DRAFT_1063 0.86 +1.0 1,075,556 - EX28DRAFT_1063 0.86 -0.0 1,075,556 - EX28DRAFT_1063 0.86 +0.2 1,075,807 - +1.0 1,075,807 - -0.2 1,075,823 + -0.1 1,075,823 + -0.3 1,075,826 - -1.1 1,075,826 - +0.3 1,075,895 + -0.3 1,075,896 - +0.5 1,075,896 - -0.2 1,076,021 + EX28DRAFT_1064 0.25 -0.5 1,076,080 - EX28DRAFT_1064 0.34 +1.0 1,076,153 + EX28DRAFT_1064 0.45 +0.3 1,076,154 - EX28DRAFT_1064 0.45 -0.5 1,076,194 + EX28DRAFT_1064 0.52 +1.8 1,076,198 + EX28DRAFT_1064 0.52 -0.4 1,076,198 + EX28DRAFT_1064 0.52 -0.4 1,076,199 - EX28DRAFT_1064 0.52 +1.4 1,076,199 - EX28DRAFT_1064 0.52 -0.9 1,076,242 + EX28DRAFT_1064 0.59 +0.7 1,076,243 - EX28DRAFT_1064 0.59 -0.5 1,076,243 - EX28DRAFT_1064 0.59 +0.2 1,076,255 + EX28DRAFT_1064 0.61 +0.4 1,076,514 + -1.0 1,076,514 + -0.5 1,076,653 - EX28DRAFT_1065 0.52 -0.1 1,076,653 - EX28DRAFT_1065 0.52 +0.2 1,076,763 + EX28DRAFT_1065 0.89 +0.6 1,076,827 - +0.8 1,076,857 - +0.4 1,076,952 + +1.7 1,077,053 - +0.5 1,077,083 + -0.2 1,077,084 - -0.6 1,077,190 + EX28DRAFT_1066 0.11 +0.1 1,077,292 + EX28DRAFT_1066 0.16 +0.1 1,077,293 - EX28DRAFT_1066 0.16 -0.2 1,077,293 - EX28DRAFT_1066 0.16 -0.3 1,077,293 - EX28DRAFT_1066 0.16 -0.7 1,077,293 - EX28DRAFT_1066 0.16 +0.2 1,077,293 - EX28DRAFT_1066 0.16 -0.1 1,077,348 + EX28DRAFT_1066 0.19 -0.1 1,077,349 - EX28DRAFT_1066 0.19 +0.2
Or see this region's nucleotide sequence