Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1051 and EX28DRAFT_1052 are separated by 16 nucleotides EX28DRAFT_1052 and EX28DRAFT_1053 are separated by 14 nucleotides EX28DRAFT_1053 and EX28DRAFT_1054 are separated by 9 nucleotides
EX28DRAFT_1051: EX28DRAFT_1051 - amidohydrolase, at 1,062,663 to 1,063,784
_1051
EX28DRAFT_1052: EX28DRAFT_1052 - FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family, at 1,063,801 to 1,065,117
_1052
EX28DRAFT_1053: EX28DRAFT_1053 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,065,132 to 1,066,064
_1053
EX28DRAFT_1054: EX28DRAFT_1054 - Acetyltransferase (GNAT) family, at 1,066,074 to 1,066,583
_1054
Position (kb)
1063
1064
1065
1066 Strain fitness (log2 ratio)
-1
0
1 at 1062.863 kb on + strand, within EX28DRAFT_1051 at 1062.864 kb on - strand, within EX28DRAFT_1051 at 1062.905 kb on + strand, within EX28DRAFT_1051 at 1063.170 kb on + strand, within EX28DRAFT_1051 at 1063.507 kb on - strand, within EX28DRAFT_1051 at 1063.690 kb on + strand at 1063.691 kb on - strand at 1063.706 kb on + strand at 1063.724 kb on - strand at 1063.724 kb on - strand at 1063.783 kb on - strand at 1063.783 kb on - strand at 1063.800 kb on + strand at 1063.800 kb on + strand at 1063.800 kb on + strand at 1063.801 kb on - strand at 1063.801 kb on - strand at 1063.858 kb on - strand at 1063.981 kb on + strand, within EX28DRAFT_1052 at 1063.981 kb on + strand, within EX28DRAFT_1052 at 1063.983 kb on + strand, within EX28DRAFT_1052 at 1064.263 kb on + strand, within EX28DRAFT_1052 at 1064.323 kb on - strand, within EX28DRAFT_1052 at 1064.572 kb on - strand, within EX28DRAFT_1052 at 1064.595 kb on - strand, within EX28DRAFT_1052 at 1064.686 kb on - strand, within EX28DRAFT_1052 at 1064.686 kb on - strand, within EX28DRAFT_1052 at 1064.702 kb on - strand, within EX28DRAFT_1052 at 1064.941 kb on + strand, within EX28DRAFT_1052 at 1064.942 kb on - strand, within EX28DRAFT_1052 at 1065.115 kb on + strand at 1065.149 kb on + strand at 1065.204 kb on - strand at 1065.249 kb on - strand, within EX28DRAFT_1053 at 1065.499 kb on - strand, within EX28DRAFT_1053 at 1065.499 kb on - strand, within EX28DRAFT_1053 at 1065.499 kb on - strand, within EX28DRAFT_1053 at 1065.499 kb on - strand, within EX28DRAFT_1053 at 1065.802 kb on - strand, within EX28DRAFT_1053 at 1066.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,062,863 + EX28DRAFT_1051 0.18 -0.3 1,062,864 - EX28DRAFT_1051 0.18 -0.7 1,062,905 + EX28DRAFT_1051 0.22 +0.2 1,063,170 + EX28DRAFT_1051 0.45 -0.5 1,063,507 - EX28DRAFT_1051 0.75 -0.6 1,063,690 + -0.4 1,063,691 - -0.3 1,063,706 + +0.7 1,063,724 - +0.5 1,063,724 - +1.1 1,063,783 - +0.0 1,063,783 - -0.0 1,063,800 + -0.7 1,063,800 + +0.4 1,063,800 + -0.2 1,063,801 - +1.3 1,063,801 - +0.2 1,063,858 - +0.3 1,063,981 + EX28DRAFT_1052 0.14 +0.2 1,063,981 + EX28DRAFT_1052 0.14 -1.6 1,063,983 + EX28DRAFT_1052 0.14 +0.7 1,064,263 + EX28DRAFT_1052 0.35 +0.0 1,064,323 - EX28DRAFT_1052 0.40 +0.5 1,064,572 - EX28DRAFT_1052 0.59 -0.1 1,064,595 - EX28DRAFT_1052 0.60 -1.1 1,064,686 - EX28DRAFT_1052 0.67 -0.3 1,064,686 - EX28DRAFT_1052 0.67 -0.3 1,064,702 - EX28DRAFT_1052 0.68 +0.0 1,064,941 + EX28DRAFT_1052 0.87 -0.5 1,064,942 - EX28DRAFT_1052 0.87 -0.9 1,065,115 + -0.6 1,065,149 + +1.0 1,065,204 - +0.6 1,065,249 - EX28DRAFT_1053 0.13 -0.1 1,065,499 - EX28DRAFT_1053 0.39 +0.9 1,065,499 - EX28DRAFT_1053 0.39 +0.4 1,065,499 - EX28DRAFT_1053 0.39 +0.5 1,065,499 - EX28DRAFT_1053 0.39 +0.9 1,065,802 - EX28DRAFT_1053 0.72 +0.1 1,066,023 - -0.4
Or see this region's nucleotide sequence