Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0985

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0984 and EX28DRAFT_0985 are separated by 17 nucleotidesEX28DRAFT_0985 and EX28DRAFT_0986 are separated by 14 nucleotides EX28DRAFT_0984: EX28DRAFT_0984 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 985,111 to 986,163 _0984 EX28DRAFT_0985: EX28DRAFT_0985 - Sugar phosphate isomerases/epimerases, at 986,181 to 986,969 _0985 EX28DRAFT_0986: EX28DRAFT_0986 - Predicted dehydrogenases and related proteins, at 986,984 to 988,039 _0986 Position (kb) 986 987Strain fitness (log2 ratio) -3 -2 -1 0 1at 985.359 kb on + strand, within EX28DRAFT_0984at 985.405 kb on + strand, within EX28DRAFT_0984at 985.406 kb on - strand, within EX28DRAFT_0984at 985.477 kb on + strand, within EX28DRAFT_0984at 985.477 kb on + strand, within EX28DRAFT_0984at 985.478 kb on - strand, within EX28DRAFT_0984at 985.488 kb on + strand, within EX28DRAFT_0984at 985.488 kb on + strand, within EX28DRAFT_0984at 985.489 kb on - strand, within EX28DRAFT_0984at 985.528 kb on + strand, within EX28DRAFT_0984at 985.874 kb on - strand, within EX28DRAFT_0984at 985.874 kb on - strand, within EX28DRAFT_0984at 985.877 kb on + strand, within EX28DRAFT_0984at 985.878 kb on - strand, within EX28DRAFT_0984at 986.045 kb on - strand, within EX28DRAFT_0984at 986.104 kb on + strandat 986.104 kb on + strandat 986.105 kb on - strandat 986.113 kb on + strandat 986.113 kb on + strandat 986.113 kb on + strandat 986.114 kb on - strandat 986.114 kb on - strandat 986.241 kb on + strandat 986.311 kb on + strand, within EX28DRAFT_0985at 986.311 kb on + strand, within EX28DRAFT_0985at 986.673 kb on + strand, within EX28DRAFT_0985at 986.673 kb on + strand, within EX28DRAFT_0985at 986.674 kb on - strand, within EX28DRAFT_0985at 986.721 kb on + strand, within EX28DRAFT_0985at 986.726 kb on + strand, within EX28DRAFT_0985at 986.727 kb on - strand, within EX28DRAFT_0985at 986.877 kb on + strand, within EX28DRAFT_0985at 986.877 kb on + strand, within EX28DRAFT_0985at 986.877 kb on + strand, within EX28DRAFT_0985at 986.886 kb on + strand, within EX28DRAFT_0985at 986.886 kb on + strand, within EX28DRAFT_0985at 986.886 kb on + strand, within EX28DRAFT_0985at 986.886 kb on + strand, within EX28DRAFT_0985at 986.887 kb on - strand, within EX28DRAFT_0985at 986.887 kb on - strand, within EX28DRAFT_0985at 986.895 kb on + strandat 986.895 kb on + strandat 986.895 kb on + strandat 986.895 kb on + strandat 986.895 kb on + strandat 986.895 kb on + strandat 986.896 kb on - strandat 986.952 kb on + strandat 986.968 kb on - strandat 986.996 kb on - strandat 986.996 kb on - strandat 987.149 kb on - strand, within EX28DRAFT_0986at 987.441 kb on - strand, within EX28DRAFT_0986at 987.547 kb on + strand, within EX28DRAFT_0986at 987.548 kb on - strand, within EX28DRAFT_0986at 987.566 kb on + strand, within EX28DRAFT_0986at 987.566 kb on + strand, within EX28DRAFT_0986at 987.567 kb on - strand, within EX28DRAFT_0986at 987.607 kb on + strand, within EX28DRAFT_0986at 987.608 kb on - strand, within EX28DRAFT_0986at 987.608 kb on - strand, within EX28DRAFT_0986at 987.712 kb on + strand, within EX28DRAFT_0986at 987.831 kb on - strand, within EX28DRAFT_0986at 987.852 kb on + strand, within EX28DRAFT_0986at 987.895 kb on + strand, within EX28DRAFT_0986at 987.895 kb on + strand, within EX28DRAFT_0986at 987.895 kb on + strand, within EX28DRAFT_0986at 987.896 kb on - strand, within EX28DRAFT_0986at 987.896 kb on - strand, within EX28DRAFT_0986at 987.904 kb on + strand, within EX28DRAFT_0986at 987.905 kb on - strand, within EX28DRAFT_0986

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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985,359 + EX28DRAFT_0984 0.24 -0.2
985,405 + EX28DRAFT_0984 0.28 +0.4
985,406 - EX28DRAFT_0984 0.28 -0.2
985,477 + EX28DRAFT_0984 0.35 +0.0
985,477 + EX28DRAFT_0984 0.35 +0.7
985,478 - EX28DRAFT_0984 0.35 -0.7
985,488 + EX28DRAFT_0984 0.36 +0.4
985,488 + EX28DRAFT_0984 0.36 -0.3
985,489 - EX28DRAFT_0984 0.36 -0.2
985,528 + EX28DRAFT_0984 0.40 -0.4
985,874 - EX28DRAFT_0984 0.72 -0.2
985,874 - EX28DRAFT_0984 0.72 +0.8
985,877 + EX28DRAFT_0984 0.73 +0.2
985,878 - EX28DRAFT_0984 0.73 -2.8
986,045 - EX28DRAFT_0984 0.89 -1.8
986,104 + +0.0
986,104 + +0.5
986,105 - -0.1
986,113 + -0.0
986,113 + +0.2
986,113 + -0.2
986,114 - -0.1
986,114 - +0.7
986,241 + -0.2
986,311 + EX28DRAFT_0985 0.16 -0.2
986,311 + EX28DRAFT_0985 0.16 +0.5
986,673 + EX28DRAFT_0985 0.62 +0.7
986,673 + EX28DRAFT_0985 0.62 +0.8
986,674 - EX28DRAFT_0985 0.62 -0.2
986,721 + EX28DRAFT_0985 0.68 -0.6
986,726 + EX28DRAFT_0985 0.69 +0.4
986,727 - EX28DRAFT_0985 0.69 -0.1
986,877 + EX28DRAFT_0985 0.88 +0.4
986,877 + EX28DRAFT_0985 0.88 +0.1
986,877 + EX28DRAFT_0985 0.88 +0.5
986,886 + EX28DRAFT_0985 0.89 +0.7
986,886 + EX28DRAFT_0985 0.89 -1.9
986,886 + EX28DRAFT_0985 0.89 -0.2
986,886 + EX28DRAFT_0985 0.89 +0.3
986,887 - EX28DRAFT_0985 0.89 +0.5
986,887 - EX28DRAFT_0985 0.89 +0.3
986,895 + -0.5
986,895 + -0.3
986,895 + -0.8
986,895 + +0.2
986,895 + -0.8
986,895 + -0.4
986,896 - +0.3
986,952 + -0.5
986,968 - +0.2
986,996 - -0.9
986,996 - -0.4
987,149 - EX28DRAFT_0986 0.16 -0.6
987,441 - EX28DRAFT_0986 0.43 -0.0
987,547 + EX28DRAFT_0986 0.53 +0.1
987,548 - EX28DRAFT_0986 0.53 -0.8
987,566 + EX28DRAFT_0986 0.55 -1.0
987,566 + EX28DRAFT_0986 0.55 +0.3
987,567 - EX28DRAFT_0986 0.55 +0.0
987,607 + EX28DRAFT_0986 0.59 +0.4
987,608 - EX28DRAFT_0986 0.59 -0.2
987,608 - EX28DRAFT_0986 0.59 -0.4
987,712 + EX28DRAFT_0986 0.69 +0.0
987,831 - EX28DRAFT_0986 0.80 +0.4
987,852 + EX28DRAFT_0986 0.82 +1.6
987,895 + EX28DRAFT_0986 0.86 +0.7
987,895 + EX28DRAFT_0986 0.86 +0.1
987,895 + EX28DRAFT_0986 0.86 +0.6
987,896 - EX28DRAFT_0986 0.86 +0.3
987,896 - EX28DRAFT_0986 0.86 +0.7
987,904 + EX28DRAFT_0986 0.87 -0.4
987,905 - EX28DRAFT_0986 0.87 +0.6

Or see this region's nucleotide sequence