Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0876

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0875 and EX28DRAFT_0876 are separated by 144 nucleotidesEX28DRAFT_0876 and EX28DRAFT_0877 are separated by 109 nucleotidesEX28DRAFT_0877 and EX28DRAFT_0878 are separated by 110 nucleotides EX28DRAFT_0875: EX28DRAFT_0875 - cardiolipin synthase, at 887,662 to 889,122 _0875 EX28DRAFT_0876: EX28DRAFT_0876 - hypothetical protein, at 889,267 to 889,440 _0876 EX28DRAFT_0877: EX28DRAFT_0877 - Putative threonine efflux protein, at 889,550 to 890,185 _0877 EX28DRAFT_0878: EX28DRAFT_0878 - Site-specific recombinase XerD, at 890,296 to 891,306 _0878 Position (kb) 889 890Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 888.362 kb on - strand, within EX28DRAFT_0875at 888.425 kb on + strand, within EX28DRAFT_0875at 888.425 kb on + strand, within EX28DRAFT_0875at 888.425 kb on + strand, within EX28DRAFT_0875at 888.425 kb on + strand, within EX28DRAFT_0875at 888.426 kb on - strand, within EX28DRAFT_0875at 888.426 kb on - strand, within EX28DRAFT_0875at 888.426 kb on - strand, within EX28DRAFT_0875at 888.426 kb on - strand, within EX28DRAFT_0875at 888.574 kb on - strand, within EX28DRAFT_0875at 888.675 kb on - strand, within EX28DRAFT_0875at 888.690 kb on + strand, within EX28DRAFT_0875at 888.693 kb on + strand, within EX28DRAFT_0875at 888.852 kb on + strand, within EX28DRAFT_0875at 888.987 kb on + strandat 888.990 kb on - strandat 889.048 kb on + strandat 889.110 kb on - strandat 889.163 kb on - strandat 889.163 kb on - strandat 889.231 kb on + strandat 889.232 kb on - strandat 889.253 kb on - strandat 889.253 kb on - strandat 889.262 kb on + strandat 889.262 kb on + strandat 889.278 kb on + strandat 889.368 kb on + strand, within EX28DRAFT_0876at 889.435 kb on - strandat 889.477 kb on + strandat 889.478 kb on - strandat 889.505 kb on + strandat 889.505 kb on + strandat 889.506 kb on - strandat 889.518 kb on - strandat 889.532 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.679 kb on + strand, within EX28DRAFT_0877at 889.680 kb on - strand, within EX28DRAFT_0877at 889.698 kb on + strand, within EX28DRAFT_0877at 889.777 kb on + strand, within EX28DRAFT_0877at 889.777 kb on + strand, within EX28DRAFT_0877at 889.777 kb on + strand, within EX28DRAFT_0877at 889.805 kb on + strand, within EX28DRAFT_0877at 889.805 kb on + strand, within EX28DRAFT_0877at 889.806 kb on - strand, within EX28DRAFT_0877at 889.806 kb on - strand, within EX28DRAFT_0877at 889.892 kb on - strand, within EX28DRAFT_0877at 889.917 kb on + strand, within EX28DRAFT_0877at 889.949 kb on + strand, within EX28DRAFT_0877at 889.950 kb on - strand, within EX28DRAFT_0877at 889.950 kb on - strand, within EX28DRAFT_0877at 889.950 kb on - strand, within EX28DRAFT_0877at 889.953 kb on + strand, within EX28DRAFT_0877at 889.954 kb on - strand, within EX28DRAFT_0877at 890.035 kb on - strand, within EX28DRAFT_0877at 890.035 kb on - strand, within EX28DRAFT_0877at 890.037 kb on + strand, within EX28DRAFT_0877at 890.038 kb on - strand, within EX28DRAFT_0877at 890.044 kb on + strand, within EX28DRAFT_0877at 890.044 kb on + strand, within EX28DRAFT_0877at 890.044 kb on + strand, within EX28DRAFT_0877at 890.045 kb on - strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877at 890.178 kb on + strandat 890.265 kb on - strandat 890.267 kb on + strandat 890.396 kb on + strandat 890.396 kb on + strandat 890.397 kb on - strand, within EX28DRAFT_0878at 890.428 kb on + strand, within EX28DRAFT_0878at 890.428 kb on + strand, within EX28DRAFT_0878at 890.428 kb on + strand, within EX28DRAFT_0878at 890.429 kb on - strand, within EX28DRAFT_0878

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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888,362 - EX28DRAFT_0875 0.48 +0.6
888,425 + EX28DRAFT_0875 0.52 +1.8
888,425 + EX28DRAFT_0875 0.52 +0.1
888,425 + EX28DRAFT_0875 0.52 +0.5
888,425 + EX28DRAFT_0875 0.52 +0.2
888,426 - EX28DRAFT_0875 0.52 +0.1
888,426 - EX28DRAFT_0875 0.52 +0.2
888,426 - EX28DRAFT_0875 0.52 +0.8
888,426 - EX28DRAFT_0875 0.52 +1.2
888,574 - EX28DRAFT_0875 0.62 +0.7
888,675 - EX28DRAFT_0875 0.69 +0.8
888,690 + EX28DRAFT_0875 0.70 +0.8
888,693 + EX28DRAFT_0875 0.71 +0.6
888,852 + EX28DRAFT_0875 0.81 -0.4
888,987 + +0.6
888,990 - +0.8
889,048 + +0.6
889,110 - +1.0
889,163 - -0.2
889,163 - -0.2
889,231 + +0.6
889,232 - -0.7
889,253 - -0.7
889,253 - +0.1
889,262 + +0.3
889,262 + +1.0
889,278 + -0.2
889,368 + EX28DRAFT_0876 0.58 -1.6
889,435 - +0.3
889,477 + +0.5
889,478 - -0.3
889,505 + -0.0
889,505 + -0.1
889,506 - +0.1
889,518 - -0.5
889,532 + -0.8
889,586 + -0.6
889,586 + -0.1
889,586 + -0.1
889,586 + -0.3
889,586 + +1.3
889,586 + -0.2
889,587 - -1.5
889,587 - -0.6
889,587 - +0.4
889,587 - +0.5
889,587 - -0.3
889,587 - -2.1
889,679 + EX28DRAFT_0877 0.20 -0.6
889,680 - EX28DRAFT_0877 0.20 -0.3
889,698 + EX28DRAFT_0877 0.23 -1.2
889,777 + EX28DRAFT_0877 0.36 +1.2
889,777 + EX28DRAFT_0877 0.36 -0.0
889,777 + EX28DRAFT_0877 0.36 +0.2
889,805 + EX28DRAFT_0877 0.40 -0.0
889,805 + EX28DRAFT_0877 0.40 -0.3
889,806 - EX28DRAFT_0877 0.40 -0.3
889,806 - EX28DRAFT_0877 0.40 -0.9
889,892 - EX28DRAFT_0877 0.54 -0.4
889,917 + EX28DRAFT_0877 0.58 +0.1
889,949 + EX28DRAFT_0877 0.63 -0.9
889,950 - EX28DRAFT_0877 0.63 +0.6
889,950 - EX28DRAFT_0877 0.63 -0.4
889,950 - EX28DRAFT_0877 0.63 +1.4
889,953 + EX28DRAFT_0877 0.63 +0.1
889,954 - EX28DRAFT_0877 0.64 -0.6
890,035 - EX28DRAFT_0877 0.76 +0.3
890,035 - EX28DRAFT_0877 0.76 -0.7
890,037 + EX28DRAFT_0877 0.77 +0.3
890,038 - EX28DRAFT_0877 0.77 -0.4
890,044 + EX28DRAFT_0877 0.78 -2.8
890,044 + EX28DRAFT_0877 0.78 -0.1
890,044 + EX28DRAFT_0877 0.78 -0.4
890,045 - EX28DRAFT_0877 0.78 +0.8
890,048 + EX28DRAFT_0877 0.78 +0.1
890,048 + EX28DRAFT_0877 0.78 +0.1
890,048 + EX28DRAFT_0877 0.78 +0.2
890,048 + EX28DRAFT_0877 0.78 +0.0
890,048 + EX28DRAFT_0877 0.78 +0.3
890,049 - EX28DRAFT_0877 0.78 -0.2
890,049 - EX28DRAFT_0877 0.78 -0.3
890,049 - EX28DRAFT_0877 0.78 -0.4
890,049 - EX28DRAFT_0877 0.78 -0.3
890,049 - EX28DRAFT_0877 0.78 +1.4
890,178 + -0.5
890,265 - -2.7
890,267 + +0.5
890,396 + -0.0
890,396 + +0.3
890,397 - EX28DRAFT_0878 0.10 -0.2
890,428 + EX28DRAFT_0878 0.13 -0.4
890,428 + EX28DRAFT_0878 0.13 -0.2
890,428 + EX28DRAFT_0878 0.13 +0.6
890,429 - EX28DRAFT_0878 0.13 +0.5

Or see this region's nucleotide sequence