Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0555 and EX28DRAFT_0556 are separated by 73 nucleotides EX28DRAFT_0556 and EX28DRAFT_0557 are separated by 256 nucleotides EX28DRAFT_0557 and EX28DRAFT_0558 overlap by 4 nucleotides
EX28DRAFT_0555: EX28DRAFT_0555 - AMP nucleosidase, at 548,303 to 549,757
_0555
EX28DRAFT_0556: EX28DRAFT_0556 - metabolite-proton symporter, at 549,831 to 551,147
_0556
EX28DRAFT_0557: EX28DRAFT_0557 - Antimicrobial peptide resistance and lipid A acylation protein PagP, at 551,404 to 551,979
_0557
EX28DRAFT_0558: EX28DRAFT_0558 - Uncharacterized protein conserved in bacteria, at 551,976 to 552,941
_0558
Position (kb) 549
550
551
552 Strain fitness (log2 ratio) -2
-1
0
1 at 549.075 kb on + strand, within EX28DRAFT_0555 at 549.142 kb on - strand, within EX28DRAFT_0555 at 549.270 kb on + strand, within EX28DRAFT_0555 at 549.384 kb on + strand, within EX28DRAFT_0555 at 549.385 kb on - strand, within EX28DRAFT_0555 at 549.653 kb on - strand at 549.748 kb on + strand at 549.751 kb on + strand at 549.752 kb on - strand at 549.800 kb on + strand at 549.800 kb on + strand at 549.800 kb on + strand at 549.800 kb on + strand at 549.800 kb on + strand at 549.801 kb on - strand at 549.801 kb on - strand at 550.059 kb on + strand, within EX28DRAFT_0556 at 550.074 kb on - strand, within EX28DRAFT_0556 at 550.146 kb on - strand, within EX28DRAFT_0556 at 550.193 kb on - strand, within EX28DRAFT_0556 at 550.321 kb on + strand, within EX28DRAFT_0556 at 550.322 kb on - strand, within EX28DRAFT_0556 at 550.322 kb on - strand, within EX28DRAFT_0556 at 550.322 kb on - strand, within EX28DRAFT_0556 at 550.322 kb on - strand, within EX28DRAFT_0556 at 550.346 kb on + strand, within EX28DRAFT_0556 at 550.348 kb on + strand, within EX28DRAFT_0556 at 550.348 kb on + strand, within EX28DRAFT_0556 at 550.348 kb on + strand, within EX28DRAFT_0556 at 550.348 kb on + strand, within EX28DRAFT_0556 at 550.348 kb on + strand, within EX28DRAFT_0556 at 550.587 kb on - strand, within EX28DRAFT_0556 at 550.596 kb on - strand, within EX28DRAFT_0556 at 550.596 kb on - strand, within EX28DRAFT_0556 at 550.599 kb on + strand, within EX28DRAFT_0556 at 550.600 kb on - strand, within EX28DRAFT_0556 at 550.600 kb on - strand, within EX28DRAFT_0556 at 550.663 kb on + strand, within EX28DRAFT_0556 at 550.705 kb on - strand, within EX28DRAFT_0556 at 551.042 kb on - strand at 551.172 kb on + strand at 551.172 kb on + strand at 551.172 kb on + strand at 551.177 kb on - strand at 551.177 kb on - strand at 551.185 kb on - strand at 551.268 kb on - strand at 551.318 kb on - strand at 551.320 kb on + strand at 551.321 kb on - strand at 551.367 kb on + strand at 551.367 kb on + strand at 551.367 kb on + strand at 551.367 kb on + strand at 551.368 kb on - strand at 551.368 kb on - strand at 551.566 kb on + strand, within EX28DRAFT_0557 at 551.598 kb on + strand, within EX28DRAFT_0557 at 551.598 kb on + strand, within EX28DRAFT_0557 at 551.603 kb on - strand, within EX28DRAFT_0557 at 551.627 kb on - strand, within EX28DRAFT_0557 at 551.848 kb on + strand, within EX28DRAFT_0557 at 551.849 kb on - strand, within EX28DRAFT_0557 at 551.849 kb on - strand, within EX28DRAFT_0557 at 551.849 kb on - strand, within EX28DRAFT_0557 at 551.892 kb on + strand, within EX28DRAFT_0557 at 551.892 kb on + strand, within EX28DRAFT_0557 at 551.893 kb on - strand, within EX28DRAFT_0557 at 551.893 kb on - strand, within EX28DRAFT_0557 at 551.917 kb on + strand, within EX28DRAFT_0557 at 551.917 kb on + strand, within EX28DRAFT_0557 at 551.918 kb on - strand, within EX28DRAFT_0557 at 551.932 kb on + strand at 551.932 kb on + strand at 551.933 kb on - strand at 551.933 kb on - strand at 551.933 kb on - strand at 551.969 kb on + strand at 552.041 kb on + strand at 552.136 kb on + strand, within EX28DRAFT_0558 at 552.137 kb on - strand, within EX28DRAFT_0558
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 549,075 + EX28DRAFT_0555 0.53 +0.3 549,142 - EX28DRAFT_0555 0.58 -0.4 549,270 + EX28DRAFT_0555 0.66 -0.7 549,384 + EX28DRAFT_0555 0.74 -2.6 549,385 - EX28DRAFT_0555 0.74 -0.1 549,653 - -1.3 549,748 + +0.1 549,751 + -0.9 549,752 - -0.9 549,800 + -1.3 549,800 + +0.1 549,800 + +0.7 549,800 + -0.2 549,800 + +1.0 549,801 - +1.5 549,801 - -0.1 550,059 + EX28DRAFT_0556 0.17 +1.0 550,074 - EX28DRAFT_0556 0.18 +0.1 550,146 - EX28DRAFT_0556 0.24 -1.1 550,193 - EX28DRAFT_0556 0.27 +1.4 550,321 + EX28DRAFT_0556 0.37 +0.3 550,322 - EX28DRAFT_0556 0.37 +0.1 550,322 - EX28DRAFT_0556 0.37 +0.1 550,322 - EX28DRAFT_0556 0.37 +0.7 550,322 - EX28DRAFT_0556 0.37 -0.7 550,346 + EX28DRAFT_0556 0.39 -0.6 550,348 + EX28DRAFT_0556 0.39 -0.3 550,348 + EX28DRAFT_0556 0.39 +0.4 550,348 + EX28DRAFT_0556 0.39 +0.2 550,348 + EX28DRAFT_0556 0.39 +1.0 550,348 + EX28DRAFT_0556 0.39 +0.2 550,587 - EX28DRAFT_0556 0.57 +0.3 550,596 - EX28DRAFT_0556 0.58 +1.5 550,596 - EX28DRAFT_0556 0.58 +0.2 550,599 + EX28DRAFT_0556 0.58 +0.3 550,600 - EX28DRAFT_0556 0.58 -0.6 550,600 - EX28DRAFT_0556 0.58 +0.5 550,663 + EX28DRAFT_0556 0.63 +0.5 550,705 - EX28DRAFT_0556 0.66 -0.0 551,042 - +0.2 551,172 + -0.8 551,172 + -0.1 551,172 + +0.1 551,177 - -1.3 551,177 - -0.2 551,185 - -0.9 551,268 - -0.2 551,318 - +0.2 551,320 + -0.6 551,321 - -0.5 551,367 + +0.6 551,367 + +0.7 551,367 + -1.1 551,367 + +1.3 551,368 - -0.2 551,368 - -0.1 551,566 + EX28DRAFT_0557 0.28 -0.4 551,598 + EX28DRAFT_0557 0.34 +0.3 551,598 + EX28DRAFT_0557 0.34 +0.5 551,603 - EX28DRAFT_0557 0.35 -0.0 551,627 - EX28DRAFT_0557 0.39 -0.4 551,848 + EX28DRAFT_0557 0.77 -0.1 551,849 - EX28DRAFT_0557 0.77 -0.2 551,849 - EX28DRAFT_0557 0.77 -0.1 551,849 - EX28DRAFT_0557 0.77 -1.3 551,892 + EX28DRAFT_0557 0.85 +0.2 551,892 + EX28DRAFT_0557 0.85 -0.3 551,893 - EX28DRAFT_0557 0.85 -0.6 551,893 - EX28DRAFT_0557 0.85 +0.1 551,917 + EX28DRAFT_0557 0.89 +0.7 551,917 + EX28DRAFT_0557 0.89 +0.3 551,918 - EX28DRAFT_0557 0.89 -0.3 551,932 + +0.0 551,932 + -0.3 551,933 - -0.2 551,933 - -0.8 551,933 - +0.0 551,969 + -0.2 552,041 + -2.4 552,136 + EX28DRAFT_0558 0.17 +0.0 552,137 - EX28DRAFT_0558 0.17 -0.0
Or see this region's nucleotide sequence