Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0503 and EX28DRAFT_0504 are separated by 2 nucleotides EX28DRAFT_0504 and EX28DRAFT_0505 overlap by 4 nucleotides EX28DRAFT_0505 and EX28DRAFT_0506 are separated by 3 nucleotides
EX28DRAFT_0503: EX28DRAFT_0503 - Nucleoside-diphosphate-sugar epimerases, at 494,590 to 495,555
_0503
EX28DRAFT_0504: EX28DRAFT_0504 - ADP-ribose pyrophosphatase, at 495,558 to 496,037
_0504
EX28DRAFT_0505: EX28DRAFT_0505 - colanic acid biosynthesis glycosyl transferase WcaI, at 496,034 to 497,257
_0505
EX28DRAFT_0506: EX28DRAFT_0506 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 497,261 to 498,697
_0506
Position (kb) 496
497
498 Strain fitness (log2 ratio) -1
0
1 at 495.049 kb on + strand, within EX28DRAFT_0503 at 495.378 kb on - strand, within EX28DRAFT_0503 at 495.511 kb on - strand at 495.514 kb on + strand at 495.514 kb on + strand at 495.515 kb on - strand at 495.589 kb on + strand at 495.822 kb on + strand, within EX28DRAFT_0504 at 495.823 kb on - strand, within EX28DRAFT_0504 at 495.830 kb on + strand, within EX28DRAFT_0504 at 495.861 kb on + strand, within EX28DRAFT_0504 at 495.862 kb on - strand, within EX28DRAFT_0504 at 495.997 kb on - strand at 496.033 kb on + strand at 496.034 kb on - strand at 496.048 kb on - strand at 496.061 kb on + strand at 496.062 kb on - strand at 496.250 kb on + strand, within EX28DRAFT_0505 at 496.441 kb on + strand, within EX28DRAFT_0505 at 496.441 kb on + strand, within EX28DRAFT_0505 at 496.452 kb on - strand, within EX28DRAFT_0505 at 496.560 kb on - strand, within EX28DRAFT_0505 at 496.917 kb on - strand, within EX28DRAFT_0505 at 497.067 kb on + strand, within EX28DRAFT_0505 at 497.192 kb on + strand at 497.192 kb on + strand at 497.236 kb on + strand at 497.237 kb on - strand at 497.237 kb on - strand at 497.245 kb on + strand at 497.246 kb on - strand at 497.247 kb on + strand at 497.247 kb on + strand at 497.247 kb on + strand at 497.247 kb on + strand at 497.248 kb on - strand at 497.458 kb on + strand, within EX28DRAFT_0506 at 497.458 kb on + strand, within EX28DRAFT_0506 at 497.738 kb on + strand, within EX28DRAFT_0506 at 497.837 kb on + strand, within EX28DRAFT_0506 at 497.837 kb on + strand, within EX28DRAFT_0506 at 497.838 kb on - strand, within EX28DRAFT_0506 at 497.855 kb on + strand, within EX28DRAFT_0506 at 497.855 kb on + strand, within EX28DRAFT_0506 at 497.855 kb on + strand, within EX28DRAFT_0506 at 497.856 kb on - strand, within EX28DRAFT_0506 at 497.856 kb on - strand, within EX28DRAFT_0506 at 497.856 kb on - strand, within EX28DRAFT_0506 at 497.859 kb on - strand, within EX28DRAFT_0506 at 497.859 kb on - strand, within EX28DRAFT_0506 at 497.859 kb on - strand, within EX28DRAFT_0506 at 498.053 kb on - strand, within EX28DRAFT_0506 at 498.195 kb on - strand, within EX28DRAFT_0506
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 495,049 + EX28DRAFT_0503 0.48 -0.3 495,378 - EX28DRAFT_0503 0.82 +0.6 495,511 - -0.7 495,514 + +0.3 495,514 + -0.1 495,515 - +0.9 495,589 + +0.5 495,822 + EX28DRAFT_0504 0.55 -0.0 495,823 - EX28DRAFT_0504 0.55 -0.9 495,830 + EX28DRAFT_0504 0.57 +0.0 495,861 + EX28DRAFT_0504 0.63 -0.7 495,862 - EX28DRAFT_0504 0.63 +0.4 495,997 - -0.2 496,033 + +0.3 496,034 - +0.1 496,048 - +0.0 496,061 + -1.0 496,062 - -0.4 496,250 + EX28DRAFT_0505 0.18 +0.0 496,441 + EX28DRAFT_0505 0.33 +0.1 496,441 + EX28DRAFT_0505 0.33 -1.1 496,452 - EX28DRAFT_0505 0.34 -0.0 496,560 - EX28DRAFT_0505 0.43 +0.0 496,917 - EX28DRAFT_0505 0.72 -0.2 497,067 + EX28DRAFT_0505 0.84 -0.5 497,192 + +0.2 497,192 + +0.0 497,236 + +1.2 497,237 - -1.2 497,237 - -0.0 497,245 + +0.2 497,246 - -0.4 497,247 + -0.5 497,247 + +0.4 497,247 + -0.0 497,247 + +0.2 497,248 - +0.3 497,458 + EX28DRAFT_0506 0.14 +0.5 497,458 + EX28DRAFT_0506 0.14 +0.6 497,738 + EX28DRAFT_0506 0.33 +0.2 497,837 + EX28DRAFT_0506 0.40 -0.2 497,837 + EX28DRAFT_0506 0.40 -0.4 497,838 - EX28DRAFT_0506 0.40 +0.3 497,855 + EX28DRAFT_0506 0.41 -0.1 497,855 + EX28DRAFT_0506 0.41 -0.2 497,855 + EX28DRAFT_0506 0.41 -0.5 497,856 - EX28DRAFT_0506 0.41 -0.5 497,856 - EX28DRAFT_0506 0.41 +0.1 497,856 - EX28DRAFT_0506 0.41 +0.2 497,859 - EX28DRAFT_0506 0.42 +0.1 497,859 - EX28DRAFT_0506 0.42 +0.4 497,859 - EX28DRAFT_0506 0.42 +0.2 498,053 - EX28DRAFT_0506 0.55 -0.6 498,195 - EX28DRAFT_0506 0.65 -0.1
Or see this region's nucleotide sequence