Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0348 and EX28DRAFT_0349 overlap by 11 nucleotides EX28DRAFT_0349 and EX28DRAFT_0350 are separated by 252 nucleotides
EX28DRAFT_0348: EX28DRAFT_0348 - glycerol-3-phosphate dehydrogenase, anaerobic, B subunit, at 310,798 to 312,015
_0348
EX28DRAFT_0349: EX28DRAFT_0349 - glycerol-3-phosphate dehydrogenase, anaerobic, A subunit, at 312,005 to 313,633
_0349
EX28DRAFT_0350: EX28DRAFT_0350 - glycerol-3-phosphate transporter, at 313,886 to 315,238
_0350
Position (kb) 312
313
314 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 311.067 kb on + strand, within EX28DRAFT_0348 at 311.139 kb on + strand, within EX28DRAFT_0348 at 311.140 kb on - strand, within EX28DRAFT_0348 at 311.140 kb on - strand, within EX28DRAFT_0348 at 311.161 kb on - strand, within EX28DRAFT_0348 at 311.444 kb on + strand, within EX28DRAFT_0348 at 311.444 kb on + strand, within EX28DRAFT_0348 at 311.628 kb on + strand, within EX28DRAFT_0348 at 311.701 kb on + strand, within EX28DRAFT_0348 at 311.808 kb on + strand, within EX28DRAFT_0348 at 311.809 kb on - strand, within EX28DRAFT_0348 at 311.809 kb on - strand, within EX28DRAFT_0348 at 311.831 kb on + strand, within EX28DRAFT_0348 at 312.052 kb on - strand at 312.172 kb on + strand, within EX28DRAFT_0349 at 312.173 kb on - strand, within EX28DRAFT_0349 at 312.561 kb on + strand, within EX28DRAFT_0349 at 312.593 kb on - strand, within EX28DRAFT_0349 at 312.702 kb on + strand, within EX28DRAFT_0349 at 312.702 kb on + strand, within EX28DRAFT_0349 at 312.836 kb on + strand, within EX28DRAFT_0349 at 312.836 kb on + strand, within EX28DRAFT_0349 at 312.836 kb on + strand, within EX28DRAFT_0349 at 312.837 kb on - strand, within EX28DRAFT_0349 at 312.837 kb on - strand, within EX28DRAFT_0349 at 313.052 kb on - strand, within EX28DRAFT_0349 at 313.053 kb on + strand, within EX28DRAFT_0349 at 313.053 kb on + strand, within EX28DRAFT_0349 at 313.053 kb on + strand, within EX28DRAFT_0349 at 313.301 kb on - strand, within EX28DRAFT_0349 at 313.313 kb on - strand, within EX28DRAFT_0349 at 313.313 kb on - strand, within EX28DRAFT_0349 at 313.351 kb on + strand, within EX28DRAFT_0349 at 313.354 kb on + strand, within EX28DRAFT_0349 at 313.354 kb on + strand, within EX28DRAFT_0349 at 313.421 kb on - strand, within EX28DRAFT_0349 at 313.538 kb on + strand at 313.679 kb on - strand at 313.817 kb on + strand at 313.885 kb on + strand at 313.886 kb on - strand at 313.894 kb on + strand at 313.952 kb on + strand at 314.007 kb on - strand at 314.009 kb on + strand at 314.010 kb on - strand at 314.010 kb on - strand at 314.016 kb on + strand at 314.046 kb on - strand, within EX28DRAFT_0350 at 314.242 kb on + strand, within EX28DRAFT_0350 at 314.243 kb on - strand, within EX28DRAFT_0350 at 314.252 kb on - strand, within EX28DRAFT_0350 at 314.252 kb on - strand, within EX28DRAFT_0350 at 314.252 kb on - strand, within EX28DRAFT_0350 at 314.456 kb on + strand, within EX28DRAFT_0350 at 314.456 kb on + strand, within EX28DRAFT_0350 at 314.457 kb on - strand, within EX28DRAFT_0350 at 314.457 kb on - strand, within EX28DRAFT_0350 at 314.457 kb on - strand, within EX28DRAFT_0350 at 314.457 kb on - strand, within EX28DRAFT_0350 at 314.457 kb on - strand, within EX28DRAFT_0350 at 314.458 kb on + strand, within EX28DRAFT_0350 at 314.459 kb on - strand, within EX28DRAFT_0350 at 314.459 kb on - strand, within EX28DRAFT_0350 at 314.576 kb on + strand, within EX28DRAFT_0350 at 314.628 kb on - strand, within EX28DRAFT_0350
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 311,067 + EX28DRAFT_0348 0.22 +0.0 311,139 + EX28DRAFT_0348 0.28 -0.2 311,140 - EX28DRAFT_0348 0.28 +0.2 311,140 - EX28DRAFT_0348 0.28 -1.6 311,161 - EX28DRAFT_0348 0.30 -1.4 311,444 + EX28DRAFT_0348 0.53 -0.7 311,444 + EX28DRAFT_0348 0.53 -0.7 311,628 + EX28DRAFT_0348 0.68 -1.9 311,701 + EX28DRAFT_0348 0.74 -0.1 311,808 + EX28DRAFT_0348 0.83 -0.3 311,809 - EX28DRAFT_0348 0.83 -1.8 311,809 - EX28DRAFT_0348 0.83 +0.2 311,831 + EX28DRAFT_0348 0.85 -0.3 312,052 - -0.8 312,172 + EX28DRAFT_0349 0.10 -0.8 312,173 - EX28DRAFT_0349 0.10 -0.6 312,561 + EX28DRAFT_0349 0.34 -1.8 312,593 - EX28DRAFT_0349 0.36 -0.6 312,702 + EX28DRAFT_0349 0.43 -1.1 312,702 + EX28DRAFT_0349 0.43 +0.6 312,836 + EX28DRAFT_0349 0.51 -0.7 312,836 + EX28DRAFT_0349 0.51 -1.1 312,836 + EX28DRAFT_0349 0.51 -1.3 312,837 - EX28DRAFT_0349 0.51 -1.3 312,837 - EX28DRAFT_0349 0.51 -2.2 313,052 - EX28DRAFT_0349 0.64 -1.5 313,053 + EX28DRAFT_0349 0.64 +0.3 313,053 + EX28DRAFT_0349 0.64 -0.6 313,053 + EX28DRAFT_0349 0.64 -1.6 313,301 - EX28DRAFT_0349 0.80 -0.7 313,313 - EX28DRAFT_0349 0.80 -1.0 313,313 - EX28DRAFT_0349 0.80 -0.1 313,351 + EX28DRAFT_0349 0.83 -4.1 313,354 + EX28DRAFT_0349 0.83 -1.2 313,354 + EX28DRAFT_0349 0.83 -2.1 313,421 - EX28DRAFT_0349 0.87 -0.2 313,538 + -1.7 313,679 - -0.4 313,817 + -3.1 313,885 + +2.9 313,886 - +3.0 313,894 + +3.3 313,952 + +1.7 314,007 - +3.1 314,009 + +3.3 314,010 - +3.3 314,010 - +3.2 314,016 + +3.6 314,046 - EX28DRAFT_0350 0.12 +3.4 314,242 + EX28DRAFT_0350 0.26 +3.4 314,243 - EX28DRAFT_0350 0.26 +2.9 314,252 - EX28DRAFT_0350 0.27 +3.4 314,252 - EX28DRAFT_0350 0.27 +4.0 314,252 - EX28DRAFT_0350 0.27 +2.8 314,456 + EX28DRAFT_0350 0.42 +3.3 314,456 + EX28DRAFT_0350 0.42 +3.0 314,457 - EX28DRAFT_0350 0.42 +3.2 314,457 - EX28DRAFT_0350 0.42 +3.4 314,457 - EX28DRAFT_0350 0.42 +3.0 314,457 - EX28DRAFT_0350 0.42 +3.4 314,457 - EX28DRAFT_0350 0.42 +3.0 314,458 + EX28DRAFT_0350 0.42 +3.7 314,459 - EX28DRAFT_0350 0.42 +3.8 314,459 - EX28DRAFT_0350 0.42 +3.2 314,576 + EX28DRAFT_0350 0.51 +3.2 314,628 - EX28DRAFT_0350 0.55 +3.4
Or see this region's nucleotide sequence