Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0217 and EX28DRAFT_0218 are separated by 1 nucleotides EX28DRAFT_0218 and EX28DRAFT_0219 overlap by 4 nucleotides EX28DRAFT_0219 and EX28DRAFT_0220 are separated by 80 nucleotides
EX28DRAFT_0217: EX28DRAFT_0217 - DNA ligase, NAD-dependent, at 171,333 to 173,348
_0217
EX28DRAFT_0218: EX28DRAFT_0218 - Uncharacterized protein conserved in bacteria, at 173,350 to 173,565
_0218
EX28DRAFT_0219: EX28DRAFT_0219 - Predicted Na+-dependent transporter, at 173,562 to 174,557
_0219
EX28DRAFT_0220: EX28DRAFT_0220 - Transcriptional regulator, at 174,638 to 175,582
_0220
Position (kb) 173
174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 173.346 kb on + strand at 173.383 kb on - strand, within EX28DRAFT_0218 at 173.404 kb on + strand, within EX28DRAFT_0218 at 173.405 kb on - strand, within EX28DRAFT_0218 at 173.440 kb on + strand, within EX28DRAFT_0218 at 173.510 kb on + strand, within EX28DRAFT_0218 at 173.564 kb on - strand at 173.618 kb on - strand at 173.865 kb on - strand, within EX28DRAFT_0219 at 173.891 kb on + strand, within EX28DRAFT_0219 at 174.080 kb on + strand, within EX28DRAFT_0219 at 174.203 kb on + strand, within EX28DRAFT_0219 at 174.204 kb on - strand, within EX28DRAFT_0219 at 174.204 kb on - strand, within EX28DRAFT_0219 at 174.204 kb on - strand, within EX28DRAFT_0219 at 174.247 kb on + strand, within EX28DRAFT_0219 at 174.383 kb on + strand, within EX28DRAFT_0219 at 174.416 kb on + strand, within EX28DRAFT_0219 at 174.501 kb on + strand at 174.550 kb on - strand at 174.550 kb on - strand at 174.558 kb on - strand at 174.584 kb on - strand at 174.660 kb on + strand at 174.660 kb on + strand at 174.673 kb on + strand at 174.673 kb on + strand at 174.980 kb on - strand, within EX28DRAFT_0220 at 175.290 kb on + strand, within EX28DRAFT_0220 at 175.344 kb on + strand, within EX28DRAFT_0220 at 175.498 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 173,346 + +0.1 173,383 - EX28DRAFT_0218 0.15 -0.8 173,404 + EX28DRAFT_0218 0.25 +0.3 173,405 - EX28DRAFT_0218 0.25 -0.1 173,440 + EX28DRAFT_0218 0.42 +0.0 173,510 + EX28DRAFT_0218 0.74 -0.8 173,564 - +0.2 173,618 - +0.4 173,865 - EX28DRAFT_0219 0.30 -0.2 173,891 + EX28DRAFT_0219 0.33 -1.2 174,080 + EX28DRAFT_0219 0.52 -1.4 174,203 + EX28DRAFT_0219 0.64 -1.0 174,204 - EX28DRAFT_0219 0.64 -3.3 174,204 - EX28DRAFT_0219 0.64 -0.3 174,204 - EX28DRAFT_0219 0.64 -0.1 174,247 + EX28DRAFT_0219 0.69 -0.9 174,383 + EX28DRAFT_0219 0.82 -0.9 174,416 + EX28DRAFT_0219 0.86 -0.5 174,501 + -1.4 174,550 - -0.9 174,550 - -0.9 174,558 - -0.2 174,584 - +0.1 174,660 + +1.0 174,660 + +1.0 174,673 + -0.3 174,673 + -0.1 174,980 - EX28DRAFT_0220 0.36 -0.2 175,290 + EX28DRAFT_0220 0.69 -0.1 175,344 + EX28DRAFT_0220 0.75 +0.2 175,498 + +0.2
Or see this region's nucleotide sequence