Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0197

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0196 and EX28DRAFT_0197 are separated by 19 nucleotidesEX28DRAFT_0197 and EX28DRAFT_0198 are separated by 289 nucleotides EX28DRAFT_0196: EX28DRAFT_0196 - transketolase, bacterial and yeast, at 149,310 to 151,298 _0196 EX28DRAFT_0197: EX28DRAFT_0197 - transaldolase, at 151,318 to 152,268 _0197 EX28DRAFT_0198: EX28DRAFT_0198 - Malic enzyme, at 152,558 to 154,837 _0198 Position (kb) 151 152 153Strain fitness (log2 ratio) -2 -1 0 1at 150.430 kb on + strand, within EX28DRAFT_0196at 150.431 kb on - strand, within EX28DRAFT_0196at 150.431 kb on - strand, within EX28DRAFT_0196at 150.431 kb on - strand, within EX28DRAFT_0196at 150.578 kb on + strand, within EX28DRAFT_0196at 150.679 kb on + strand, within EX28DRAFT_0196at 150.846 kb on - strand, within EX28DRAFT_0196at 150.853 kb on + strand, within EX28DRAFT_0196at 150.853 kb on + strand, within EX28DRAFT_0196at 150.853 kb on + strand, within EX28DRAFT_0196at 150.854 kb on - strand, within EX28DRAFT_0196at 150.854 kb on - strand, within EX28DRAFT_0196at 150.854 kb on - strand, within EX28DRAFT_0196at 150.854 kb on - strand, within EX28DRAFT_0196at 150.857 kb on + strand, within EX28DRAFT_0196at 150.858 kb on - strand, within EX28DRAFT_0196at 150.858 kb on - strand, within EX28DRAFT_0196at 150.858 kb on - strand, within EX28DRAFT_0196at 150.858 kb on - strand, within EX28DRAFT_0196at 151.088 kb on - strand, within EX28DRAFT_0196at 151.281 kb on + strandat 151.298 kb on + strandat 151.298 kb on + strandat 151.298 kb on + strandat 151.298 kb on + strandat 151.298 kb on + strandat 151.299 kb on - strandat 151.299 kb on - strandat 151.299 kb on - strandat 151.299 kb on - strandat 151.516 kb on + strand, within EX28DRAFT_0197at 151.517 kb on - strand, within EX28DRAFT_0197at 151.644 kb on - strand, within EX28DRAFT_0197at 151.644 kb on - strand, within EX28DRAFT_0197at 151.648 kb on - strand, within EX28DRAFT_0197at 151.688 kb on + strand, within EX28DRAFT_0197at 151.688 kb on + strand, within EX28DRAFT_0197at 151.689 kb on - strand, within EX28DRAFT_0197at 151.689 kb on - strand, within EX28DRAFT_0197at 151.724 kb on + strand, within EX28DRAFT_0197at 151.724 kb on + strand, within EX28DRAFT_0197at 151.725 kb on - strand, within EX28DRAFT_0197at 151.725 kb on - strand, within EX28DRAFT_0197at 151.897 kb on - strand, within EX28DRAFT_0197at 151.897 kb on - strand, within EX28DRAFT_0197at 151.897 kb on - strand, within EX28DRAFT_0197at 151.945 kb on - strand, within EX28DRAFT_0197at 152.035 kb on - strand, within EX28DRAFT_0197at 152.099 kb on + strand, within EX28DRAFT_0197at 152.158 kb on + strand, within EX28DRAFT_0197at 152.268 kb on + strandat 152.269 kb on - strandat 152.276 kb on + strandat 152.277 kb on - strandat 152.404 kb on - strandat 152.406 kb on - strandat 152.484 kb on + strandat 152.484 kb on + strandat 152.519 kb on - strandat 152.519 kb on - strandat 152.554 kb on + strandat 152.555 kb on - strandat 152.736 kb on - strandat 152.736 kb on - strandat 152.845 kb on - strand, within EX28DRAFT_0198at 152.990 kb on + strand, within EX28DRAFT_0198at 152.990 kb on + strand, within EX28DRAFT_0198at 152.991 kb on - strand, within EX28DRAFT_0198at 152.991 kb on - strand, within EX28DRAFT_0198at 153.230 kb on - strand, within EX28DRAFT_0198at 153.233 kb on + strand, within EX28DRAFT_0198at 153.233 kb on + strand, within EX28DRAFT_0198at 153.234 kb on - strand, within EX28DRAFT_0198at 153.234 kb on - strand, within EX28DRAFT_0198

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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150,430 + EX28DRAFT_0196 0.56 -0.3
150,431 - EX28DRAFT_0196 0.56 +0.1
150,431 - EX28DRAFT_0196 0.56 -0.2
150,431 - EX28DRAFT_0196 0.56 +0.3
150,578 + EX28DRAFT_0196 0.64 -0.3
150,679 + EX28DRAFT_0196 0.69 -0.1
150,846 - EX28DRAFT_0196 0.77 -1.0
150,853 + EX28DRAFT_0196 0.78 +0.2
150,853 + EX28DRAFT_0196 0.78 +0.6
150,853 + EX28DRAFT_0196 0.78 +0.0
150,854 - EX28DRAFT_0196 0.78 +0.1
150,854 - EX28DRAFT_0196 0.78 -0.1
150,854 - EX28DRAFT_0196 0.78 +0.9
150,854 - EX28DRAFT_0196 0.78 +0.4
150,857 + EX28DRAFT_0196 0.78 +0.0
150,858 - EX28DRAFT_0196 0.78 +0.3
150,858 - EX28DRAFT_0196 0.78 -0.3
150,858 - EX28DRAFT_0196 0.78 -0.4
150,858 - EX28DRAFT_0196 0.78 -0.4
151,088 - EX28DRAFT_0196 0.89 +0.8
151,281 + -0.7
151,298 + -0.0
151,298 + -1.9
151,298 + +0.1
151,298 + -0.4
151,298 + +0.2
151,299 - +0.6
151,299 - -0.9
151,299 - -0.1
151,299 - -1.2
151,516 + EX28DRAFT_0197 0.21 -0.0
151,517 - EX28DRAFT_0197 0.21 -0.2
151,644 - EX28DRAFT_0197 0.34 +1.0
151,644 - EX28DRAFT_0197 0.34 +0.5
151,648 - EX28DRAFT_0197 0.35 -0.1
151,688 + EX28DRAFT_0197 0.39 -0.2
151,688 + EX28DRAFT_0197 0.39 -0.0
151,689 - EX28DRAFT_0197 0.39 +0.5
151,689 - EX28DRAFT_0197 0.39 +0.1
151,724 + EX28DRAFT_0197 0.43 -0.8
151,724 + EX28DRAFT_0197 0.43 +0.3
151,725 - EX28DRAFT_0197 0.43 +0.1
151,725 - EX28DRAFT_0197 0.43 -0.3
151,897 - EX28DRAFT_0197 0.61 -0.3
151,897 - EX28DRAFT_0197 0.61 +1.3
151,897 - EX28DRAFT_0197 0.61 +0.1
151,945 - EX28DRAFT_0197 0.66 -0.2
152,035 - EX28DRAFT_0197 0.75 -0.5
152,099 + EX28DRAFT_0197 0.82 +0.2
152,158 + EX28DRAFT_0197 0.88 +1.7
152,268 + -0.9
152,269 - +0.4
152,276 + +0.4
152,277 - +0.4
152,404 - +0.2
152,406 - +0.4
152,484 + +0.9
152,484 + -0.1
152,519 - +1.1
152,519 - +0.0
152,554 + +0.9
152,555 - -0.9
152,736 - -0.7
152,736 - -0.4
152,845 - EX28DRAFT_0198 0.13 -0.1
152,990 + EX28DRAFT_0198 0.19 +0.3
152,990 + EX28DRAFT_0198 0.19 -0.3
152,991 - EX28DRAFT_0198 0.19 +0.0
152,991 - EX28DRAFT_0198 0.19 +0.4
153,230 - EX28DRAFT_0198 0.29 +0.3
153,233 + EX28DRAFT_0198 0.30 +0.5
153,233 + EX28DRAFT_0198 0.30 +0.6
153,234 - EX28DRAFT_0198 0.30 -0.8
153,234 - EX28DRAFT_0198 0.30 -0.0

Or see this region's nucleotide sequence