Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0170

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0169 and EX28DRAFT_0170 are separated by 227 nucleotidesEX28DRAFT_0170 and EX28DRAFT_0171 are separated by 83 nucleotides EX28DRAFT_0169: EX28DRAFT_0169 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 117,999 to 119,429 _0169 EX28DRAFT_0170: EX28DRAFT_0170 - uracil phosphoribosyltransferase (EC 2.4.2.9), at 119,657 to 120,283 _0170 EX28DRAFT_0171: EX28DRAFT_0171 - uracil-xanthine permease, at 120,367 to 121,656 _0171 Position (kb) 119 120 121Strain fitness (log2 ratio) -2 -1 0 1at 118.724 kb on + strand, within EX28DRAFT_0169at 118.724 kb on + strand, within EX28DRAFT_0169at 118.725 kb on - strand, within EX28DRAFT_0169at 118.754 kb on + strand, within EX28DRAFT_0169at 118.754 kb on + strand, within EX28DRAFT_0169at 118.754 kb on + strand, within EX28DRAFT_0169at 118.872 kb on - strand, within EX28DRAFT_0169at 118.873 kb on + strand, within EX28DRAFT_0169at 118.886 kb on + strand, within EX28DRAFT_0169at 118.917 kb on + strand, within EX28DRAFT_0169at 118.933 kb on - strand, within EX28DRAFT_0169at 118.933 kb on - strand, within EX28DRAFT_0169at 118.935 kb on + strand, within EX28DRAFT_0169at 118.936 kb on - strand, within EX28DRAFT_0169at 118.936 kb on - strand, within EX28DRAFT_0169at 118.936 kb on - strand, within EX28DRAFT_0169at 118.937 kb on + strand, within EX28DRAFT_0169at 118.937 kb on + strand, within EX28DRAFT_0169at 118.937 kb on + strand, within EX28DRAFT_0169at 118.938 kb on - strand, within EX28DRAFT_0169at 118.938 kb on - strand, within EX28DRAFT_0169at 118.938 kb on - strand, within EX28DRAFT_0169at 118.938 kb on - strand, within EX28DRAFT_0169at 118.938 kb on - strand, within EX28DRAFT_0169at 118.938 kb on - strand, within EX28DRAFT_0169at 119.180 kb on + strand, within EX28DRAFT_0169at 119.181 kb on - strand, within EX28DRAFT_0169at 119.188 kb on - strand, within EX28DRAFT_0169at 119.271 kb on - strand, within EX28DRAFT_0169at 119.322 kb on - strandat 119.393 kb on + strandat 119.394 kb on - strandat 119.394 kb on - strandat 119.394 kb on - strandat 119.427 kb on + strandat 119.465 kb on + strandat 119.466 kb on - strandat 119.466 kb on - strandat 119.466 kb on - strandat 119.471 kb on + strandat 119.471 kb on + strandat 119.481 kb on + strandat 119.482 kb on - strandat 119.567 kb on + strandat 119.568 kb on - strandat 119.568 kb on - strandat 119.568 kb on - strandat 119.568 kb on - strandat 119.592 kb on + strandat 119.960 kb on + strand, within EX28DRAFT_0170at 119.993 kb on + strand, within EX28DRAFT_0170at 119.994 kb on - strand, within EX28DRAFT_0170at 119.994 kb on - strand, within EX28DRAFT_0170at 120.110 kb on - strand, within EX28DRAFT_0170at 120.118 kb on + strand, within EX28DRAFT_0170at 120.119 kb on - strand, within EX28DRAFT_0170at 120.191 kb on + strand, within EX28DRAFT_0170at 120.192 kb on - strand, within EX28DRAFT_0170at 120.192 kb on - strand, within EX28DRAFT_0170at 120.192 kb on - strand, within EX28DRAFT_0170at 120.230 kb on + strandat 120.296 kb on - strandat 120.296 kb on - strandat 120.346 kb on + strandat 120.346 kb on + strandat 120.347 kb on - strandat 120.347 kb on - strandat 120.349 kb on + strandat 120.350 kb on - strandat 120.366 kb on + strandat 120.367 kb on - strandat 120.367 kb on - strandat 120.426 kb on + strandat 120.535 kb on + strand, within EX28DRAFT_0171at 120.591 kb on + strand, within EX28DRAFT_0171at 120.648 kb on + strand, within EX28DRAFT_0171at 120.649 kb on - strand, within EX28DRAFT_0171at 120.649 kb on - strand, within EX28DRAFT_0171at 120.792 kb on + strand, within EX28DRAFT_0171at 120.803 kb on + strand, within EX28DRAFT_0171at 120.804 kb on - strand, within EX28DRAFT_0171at 120.844 kb on - strand, within EX28DRAFT_0171at 121.021 kb on + strand, within EX28DRAFT_0171at 121.022 kb on - strand, within EX28DRAFT_0171at 121.023 kb on + strand, within EX28DRAFT_0171at 121.047 kb on + strand, within EX28DRAFT_0171at 121.125 kb on + strand, within EX28DRAFT_0171at 121.229 kb on - strand, within EX28DRAFT_0171at 121.229 kb on - strand, within EX28DRAFT_0171at 121.257 kb on + strand, within EX28DRAFT_0171at 121.268 kb on - strand, within EX28DRAFT_0171at 121.272 kb on + strand, within EX28DRAFT_0171at 121.273 kb on - strand, within EX28DRAFT_0171

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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118,724 + EX28DRAFT_0169 0.51 -0.6
118,724 + EX28DRAFT_0169 0.51 +0.2
118,725 - EX28DRAFT_0169 0.51 -0.3
118,754 + EX28DRAFT_0169 0.53 -0.6
118,754 + EX28DRAFT_0169 0.53 -0.1
118,754 + EX28DRAFT_0169 0.53 -0.0
118,872 - EX28DRAFT_0169 0.61 +0.9
118,873 + EX28DRAFT_0169 0.61 -0.5
118,886 + EX28DRAFT_0169 0.62 -0.9
118,917 + EX28DRAFT_0169 0.64 -0.1
118,933 - EX28DRAFT_0169 0.65 +0.4
118,933 - EX28DRAFT_0169 0.65 +0.9
118,935 + EX28DRAFT_0169 0.65 +0.1
118,936 - EX28DRAFT_0169 0.65 -0.1
118,936 - EX28DRAFT_0169 0.65 -2.4
118,936 - EX28DRAFT_0169 0.65 +0.7
118,937 + EX28DRAFT_0169 0.66 -0.5
118,937 + EX28DRAFT_0169 0.66 -0.0
118,937 + EX28DRAFT_0169 0.66 +0.0
118,938 - EX28DRAFT_0169 0.66 -0.2
118,938 - EX28DRAFT_0169 0.66 +0.1
118,938 - EX28DRAFT_0169 0.66 -0.3
118,938 - EX28DRAFT_0169 0.66 +0.0
118,938 - EX28DRAFT_0169 0.66 -0.2
118,938 - EX28DRAFT_0169 0.66 +0.1
119,180 + EX28DRAFT_0169 0.83 +1.5
119,181 - EX28DRAFT_0169 0.83 -0.8
119,188 - EX28DRAFT_0169 0.83 +0.3
119,271 - EX28DRAFT_0169 0.89 -0.0
119,322 - -0.3
119,393 + +0.4
119,394 - -1.1
119,394 - +0.6
119,394 - +1.2
119,427 + +0.3
119,465 + -0.5
119,466 - -0.0
119,466 - +0.1
119,466 - -0.0
119,471 + +0.2
119,471 + -0.1
119,481 + -0.9
119,482 - -1.5
119,567 + -0.0
119,568 - +0.4
119,568 - +1.0
119,568 - -1.0
119,568 - -0.1
119,592 + -0.1
119,960 + EX28DRAFT_0170 0.48 -1.4
119,993 + EX28DRAFT_0170 0.54 -2.2
119,994 - EX28DRAFT_0170 0.54 -1.8
119,994 - EX28DRAFT_0170 0.54 -2.0
120,110 - EX28DRAFT_0170 0.72 -1.4
120,118 + EX28DRAFT_0170 0.74 -1.6
120,119 - EX28DRAFT_0170 0.74 -1.3
120,191 + EX28DRAFT_0170 0.85 -1.7
120,192 - EX28DRAFT_0170 0.85 -1.1
120,192 - EX28DRAFT_0170 0.85 -1.6
120,192 - EX28DRAFT_0170 0.85 -0.5
120,230 + -0.6
120,296 - -0.8
120,296 - +0.7
120,346 + -0.2
120,346 + -0.4
120,347 - +0.5
120,347 - +0.0
120,349 + -0.2
120,350 - -0.4
120,366 + +0.3
120,367 - -0.1
120,367 - -0.3
120,426 + -0.2
120,535 + EX28DRAFT_0171 0.13 -0.1
120,591 + EX28DRAFT_0171 0.17 +0.3
120,648 + EX28DRAFT_0171 0.22 -1.3
120,649 - EX28DRAFT_0171 0.22 -0.9
120,649 - EX28DRAFT_0171 0.22 -0.5
120,792 + EX28DRAFT_0171 0.33 -0.2
120,803 + EX28DRAFT_0171 0.34 -0.3
120,804 - EX28DRAFT_0171 0.34 -1.5
120,844 - EX28DRAFT_0171 0.37 -0.5
121,021 + EX28DRAFT_0171 0.51 -0.0
121,022 - EX28DRAFT_0171 0.51 -0.2
121,023 + EX28DRAFT_0171 0.51 +0.3
121,047 + EX28DRAFT_0171 0.53 -0.2
121,125 + EX28DRAFT_0171 0.59 -0.4
121,229 - EX28DRAFT_0171 0.67 -0.1
121,229 - EX28DRAFT_0171 0.67 -0.5
121,257 + EX28DRAFT_0171 0.69 -0.1
121,268 - EX28DRAFT_0171 0.70 +0.0
121,272 + EX28DRAFT_0171 0.70 +0.3
121,273 - EX28DRAFT_0171 0.70 -0.3

Or see this region's nucleotide sequence