Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0157

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0155 and EX28DRAFT_0156 are separated by 9 nucleotidesEX28DRAFT_0156 and EX28DRAFT_0157 overlap by 35 nucleotidesEX28DRAFT_0157 and EX28DRAFT_0158 are separated by 115 nucleotidesEX28DRAFT_0158 and EX28DRAFT_0159 are separated by 10 nucleotides EX28DRAFT_0155: EX28DRAFT_0155 - Sugar phosphate isomerases/epimerases, at 102,500 to 103,390 _0155 EX28DRAFT_0156: EX28DRAFT_0156 - Uncharacterized enzyme involved in inositol metabolism, at 103,400 to 104,224 _0156 EX28DRAFT_0157: EX28DRAFT_0157 - Arabinose efflux permease, at 104,190 to 105,404 _0157 EX28DRAFT_0158: EX28DRAFT_0158 - transcriptional regulator, HxlR family, at 105,520 to 105,963 _0158 EX28DRAFT_0159: EX28DRAFT_0159 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 105,974 to 106,717 _0159 Position (kb) 104 105 106Strain fitness (log2 ratio) -2 -1 0 1 2at 103.207 kb on + strand, within EX28DRAFT_0155at 103.272 kb on - strand, within EX28DRAFT_0155at 103.346 kb on + strandat 103.347 kb on - strandat 103.348 kb on + strandat 103.349 kb on - strandat 103.349 kb on - strandat 103.388 kb on + strandat 103.389 kb on - strandat 103.413 kb on + strandat 103.664 kb on + strand, within EX28DRAFT_0156at 103.665 kb on - strand, within EX28DRAFT_0156at 103.749 kb on - strand, within EX28DRAFT_0156at 103.817 kb on + strand, within EX28DRAFT_0156at 103.949 kb on + strand, within EX28DRAFT_0156at 103.964 kb on + strand, within EX28DRAFT_0156at 103.964 kb on + strand, within EX28DRAFT_0156at 103.965 kb on - strand, within EX28DRAFT_0156at 103.965 kb on - strand, within EX28DRAFT_0156at 103.967 kb on + strand, within EX28DRAFT_0156at 103.967 kb on + strand, within EX28DRAFT_0156at 103.967 kb on + strand, within EX28DRAFT_0156at 103.968 kb on - strand, within EX28DRAFT_0156at 103.968 kb on - strand, within EX28DRAFT_0156at 104.041 kb on + strand, within EX28DRAFT_0156at 104.042 kb on - strand, within EX28DRAFT_0156at 104.051 kb on + strand, within EX28DRAFT_0156at 104.052 kb on - strand, within EX28DRAFT_0156at 104.120 kb on + strand, within EX28DRAFT_0156at 104.124 kb on - strand, within EX28DRAFT_0156at 104.124 kb on - strand, within EX28DRAFT_0156at 104.308 kb on + strandat 104.309 kb on - strandat 104.309 kb on - strandat 104.309 kb on - strandat 104.365 kb on + strand, within EX28DRAFT_0157at 104.366 kb on - strand, within EX28DRAFT_0157at 104.366 kb on - strand, within EX28DRAFT_0157at 104.424 kb on - strand, within EX28DRAFT_0157at 104.460 kb on + strand, within EX28DRAFT_0157at 104.460 kb on + strand, within EX28DRAFT_0157at 104.460 kb on + strand, within EX28DRAFT_0157at 104.460 kb on + strand, within EX28DRAFT_0157at 104.526 kb on + strand, within EX28DRAFT_0157at 104.526 kb on + strand, within EX28DRAFT_0157at 104.532 kb on - strand, within EX28DRAFT_0157at 104.552 kb on + strand, within EX28DRAFT_0157at 104.552 kb on + strand, within EX28DRAFT_0157at 104.955 kb on + strand, within EX28DRAFT_0157at 104.955 kb on + strand, within EX28DRAFT_0157at 105.062 kb on + strand, within EX28DRAFT_0157at 105.150 kb on + strand, within EX28DRAFT_0157at 105.151 kb on - strand, within EX28DRAFT_0157at 105.308 kb on - strandat 105.308 kb on - strandat 105.310 kb on + strandat 105.405 kb on - strandat 105.405 kb on - strandat 105.459 kb on + strandat 105.460 kb on - strandat 105.485 kb on + strandat 105.491 kb on + strandat 105.492 kb on - strandat 105.537 kb on - strandat 105.547 kb on + strandat 105.547 kb on + strandat 105.547 kb on + strandat 105.548 kb on - strandat 105.610 kb on - strand, within EX28DRAFT_0158at 105.722 kb on + strand, within EX28DRAFT_0158at 105.757 kb on + strand, within EX28DRAFT_0158at 105.758 kb on - strand, within EX28DRAFT_0158at 105.758 kb on - strand, within EX28DRAFT_0158at 105.758 kb on - strand, within EX28DRAFT_0158at 105.979 kb on + strandat 105.979 kb on + strandat 105.979 kb on + strandat 105.980 kb on - strandat 106.137 kb on + strand, within EX28DRAFT_0159at 106.289 kb on + strand, within EX28DRAFT_0159at 106.289 kb on + strand, within EX28DRAFT_0159at 106.289 kb on + strand, within EX28DRAFT_0159at 106.289 kb on + strand, within EX28DRAFT_0159at 106.290 kb on - strand, within EX28DRAFT_0159at 106.290 kb on - strand, within EX28DRAFT_0159at 106.310 kb on - strand, within EX28DRAFT_0159

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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103,207 + EX28DRAFT_0155 0.79 -1.2
103,272 - EX28DRAFT_0155 0.87 +0.2
103,346 + +0.1
103,347 - -0.8
103,348 + -1.4
103,349 - +1.9
103,349 - +0.0
103,388 + +0.2
103,389 - -0.7
103,413 + -0.1
103,664 + EX28DRAFT_0156 0.32 +0.1
103,665 - EX28DRAFT_0156 0.32 +0.2
103,749 - EX28DRAFT_0156 0.42 +0.6
103,817 + EX28DRAFT_0156 0.51 -0.4
103,949 + EX28DRAFT_0156 0.67 -0.2
103,964 + EX28DRAFT_0156 0.68 -2.4
103,964 + EX28DRAFT_0156 0.68 -0.4
103,965 - EX28DRAFT_0156 0.68 -0.3
103,965 - EX28DRAFT_0156 0.68 +0.0
103,967 + EX28DRAFT_0156 0.69 -0.3
103,967 + EX28DRAFT_0156 0.69 -0.0
103,967 + EX28DRAFT_0156 0.69 -0.0
103,968 - EX28DRAFT_0156 0.69 +0.1
103,968 - EX28DRAFT_0156 0.69 +2.0
104,041 + EX28DRAFT_0156 0.78 -0.3
104,042 - EX28DRAFT_0156 0.78 +0.3
104,051 + EX28DRAFT_0156 0.79 -0.3
104,052 - EX28DRAFT_0156 0.79 +0.0
104,120 + EX28DRAFT_0156 0.87 -0.2
104,124 - EX28DRAFT_0156 0.88 -0.2
104,124 - EX28DRAFT_0156 0.88 -0.4
104,308 + -0.2
104,309 - -0.9
104,309 - +0.6
104,309 - +0.9
104,365 + EX28DRAFT_0157 0.14 +0.5
104,366 - EX28DRAFT_0157 0.14 +0.0
104,366 - EX28DRAFT_0157 0.14 +0.1
104,424 - EX28DRAFT_0157 0.19 +0.7
104,460 + EX28DRAFT_0157 0.22 +0.1
104,460 + EX28DRAFT_0157 0.22 +0.1
104,460 + EX28DRAFT_0157 0.22 +0.3
104,460 + EX28DRAFT_0157 0.22 +0.7
104,526 + EX28DRAFT_0157 0.28 +0.5
104,526 + EX28DRAFT_0157 0.28 +0.9
104,532 - EX28DRAFT_0157 0.28 +0.2
104,552 + EX28DRAFT_0157 0.30 -2.2
104,552 + EX28DRAFT_0157 0.30 +0.6
104,955 + EX28DRAFT_0157 0.63 -1.6
104,955 + EX28DRAFT_0157 0.63 +0.0
105,062 + EX28DRAFT_0157 0.72 -2.6
105,150 + EX28DRAFT_0157 0.79 -0.0
105,151 - EX28DRAFT_0157 0.79 +0.3
105,308 - -0.4
105,308 - -0.2
105,310 + -0.3
105,405 - +0.2
105,405 - -0.1
105,459 + -1.5
105,460 - -0.2
105,485 + +0.8
105,491 + -0.7
105,492 - -0.0
105,537 - -0.0
105,547 + -2.2
105,547 + +0.1
105,547 + +0.5
105,548 - +0.1
105,610 - EX28DRAFT_0158 0.20 +0.2
105,722 + EX28DRAFT_0158 0.45 +0.4
105,757 + EX28DRAFT_0158 0.53 -0.3
105,758 - EX28DRAFT_0158 0.54 -0.2
105,758 - EX28DRAFT_0158 0.54 +0.1
105,758 - EX28DRAFT_0158 0.54 +0.7
105,979 + -0.8
105,979 + +0.3
105,979 + +0.1
105,980 - +0.0
106,137 + EX28DRAFT_0159 0.22 -0.2
106,289 + EX28DRAFT_0159 0.42 -0.2
106,289 + EX28DRAFT_0159 0.42 +0.4
106,289 + EX28DRAFT_0159 0.42 -0.9
106,289 + EX28DRAFT_0159 0.42 -0.2
106,290 - EX28DRAFT_0159 0.42 +0.7
106,290 - EX28DRAFT_0159 0.42 -0.0
106,310 - EX28DRAFT_0159 0.45 -0.0

Or see this region's nucleotide sequence