Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0069 and EX28DRAFT_0070 are separated by 11 nucleotides EX28DRAFT_0070 and EX28DRAFT_0071 overlap by 16 nucleotides
EX28DRAFT_0069: EX28DRAFT_0069 - Superfamily II DNA and RNA helicases, at 10,347 to 11,675
_0069
EX28DRAFT_0070: EX28DRAFT_0070 - Predicted O-methyltransferase, at 11,687 to 12,545
_0070
EX28DRAFT_0071: EX28DRAFT_0071 - L-aspartate oxidase (EC 1.4.3.16), at 12,530 to 14,149
_0071
Position (kb) 11
12
13 Strain fitness (log2 ratio) -2
-1
0
1 at 11.370 kb on - strand, within EX28DRAFT_0069 at 11.681 kb on - strand at 11.681 kb on - strand at 11.702 kb on + strand at 11.703 kb on - strand at 11.704 kb on + strand at 11.704 kb on + strand at 11.704 kb on + strand at 11.705 kb on - strand at 11.720 kb on - strand at 11.736 kb on + strand at 11.737 kb on - strand at 11.737 kb on - strand at 11.771 kb on + strand at 11.771 kb on + strand at 11.792 kb on - strand, within EX28DRAFT_0070 at 11.792 kb on - strand, within EX28DRAFT_0070 at 11.948 kb on + strand, within EX28DRAFT_0070 at 11.948 kb on + strand, within EX28DRAFT_0070 at 11.949 kb on - strand, within EX28DRAFT_0070 at 12.072 kb on - strand, within EX28DRAFT_0070 at 12.231 kb on + strand, within EX28DRAFT_0070 at 12.231 kb on + strand, within EX28DRAFT_0070 at 12.232 kb on - strand, within EX28DRAFT_0070 at 12.233 kb on + strand, within EX28DRAFT_0070 at 12.252 kb on - strand, within EX28DRAFT_0070 at 12.386 kb on + strand, within EX28DRAFT_0070 at 12.386 kb on + strand, within EX28DRAFT_0070 at 12.507 kb on + strand at 12.539 kb on + strand at 12.539 kb on + strand at 12.543 kb on + strand at 12.543 kb on + strand at 12.544 kb on - strand at 12.604 kb on + strand at 12.606 kb on + strand at 12.606 kb on + strand at 12.606 kb on + strand at 12.606 kb on + strand at 12.628 kb on + strand at 12.718 kb on - strand, within EX28DRAFT_0071 at 12.720 kb on + strand, within EX28DRAFT_0071 at 12.721 kb on - strand, within EX28DRAFT_0071 at 12.802 kb on - strand, within EX28DRAFT_0071 at 12.812 kb on - strand, within EX28DRAFT_0071 at 12.812 kb on - strand, within EX28DRAFT_0071 at 12.812 kb on - strand, within EX28DRAFT_0071 at 12.821 kb on + strand, within EX28DRAFT_0071 at 12.821 kb on + strand, within EX28DRAFT_0071 at 12.822 kb on - strand, within EX28DRAFT_0071 at 12.992 kb on - strand, within EX28DRAFT_0071 at 13.017 kb on + strand, within EX28DRAFT_0071 at 13.018 kb on - strand, within EX28DRAFT_0071 at 13.038 kb on + strand, within EX28DRAFT_0071 at 13.039 kb on - strand, within EX28DRAFT_0071 at 13.039 kb on - strand, within EX28DRAFT_0071 at 13.050 kb on - strand, within EX28DRAFT_0071 at 13.057 kb on + strand, within EX28DRAFT_0071 at 13.058 kb on - strand, within EX28DRAFT_0071 at 13.093 kb on + strand, within EX28DRAFT_0071 at 13.093 kb on + strand, within EX28DRAFT_0071 at 13.093 kb on + strand, within EX28DRAFT_0071 at 13.095 kb on + strand, within EX28DRAFT_0071 at 13.096 kb on - strand, within EX28DRAFT_0071 at 13.096 kb on - strand, within EX28DRAFT_0071 at 13.096 kb on - strand, within EX28DRAFT_0071 at 13.133 kb on + strand, within EX28DRAFT_0071 at 13.221 kb on + strand, within EX28DRAFT_0071 at 13.222 kb on - strand, within EX28DRAFT_0071 at 13.512 kb on + strand, within EX28DRAFT_0071 at 13.513 kb on - strand, within EX28DRAFT_0071 at 13.519 kb on - strand, within EX28DRAFT_0071
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 11,370 - EX28DRAFT_0069 0.77 -0.9 11,681 - +0.3 11,681 - +0.1 11,702 + +0.2 11,703 - +0.8 11,704 + +0.5 11,704 + +0.7 11,704 + -0.2 11,705 - -0.7 11,720 - -1.0 11,736 + -0.6 11,737 - +0.4 11,737 - +0.8 11,771 + -0.1 11,771 + -0.3 11,792 - EX28DRAFT_0070 0.12 -0.7 11,792 - EX28DRAFT_0070 0.12 -0.4 11,948 + EX28DRAFT_0070 0.30 -0.0 11,948 + EX28DRAFT_0070 0.30 +0.1 11,949 - EX28DRAFT_0070 0.31 -0.2 12,072 - EX28DRAFT_0070 0.45 -0.3 12,231 + EX28DRAFT_0070 0.63 +0.4 12,231 + EX28DRAFT_0070 0.63 +0.2 12,232 - EX28DRAFT_0070 0.63 -0.7 12,233 + EX28DRAFT_0070 0.64 +0.3 12,252 - EX28DRAFT_0070 0.66 -0.8 12,386 + EX28DRAFT_0070 0.81 +0.3 12,386 + EX28DRAFT_0070 0.81 -0.2 12,507 + -0.2 12,539 + -0.4 12,539 + +0.2 12,543 + -0.1 12,543 + +0.5 12,544 - +0.1 12,604 + +0.2 12,606 + -0.1 12,606 + -1.3 12,606 + -0.2 12,606 + +0.2 12,628 + +0.1 12,718 - EX28DRAFT_0071 0.12 -1.3 12,720 + EX28DRAFT_0071 0.12 -0.4 12,721 - EX28DRAFT_0071 0.12 -0.0 12,802 - EX28DRAFT_0071 0.17 -0.2 12,812 - EX28DRAFT_0071 0.17 -2.1 12,812 - EX28DRAFT_0071 0.17 +1.2 12,812 - EX28DRAFT_0071 0.17 -0.1 12,821 + EX28DRAFT_0071 0.18 -1.0 12,821 + EX28DRAFT_0071 0.18 -1.1 12,822 - EX28DRAFT_0071 0.18 +0.8 12,992 - EX28DRAFT_0071 0.29 -0.4 13,017 + EX28DRAFT_0071 0.30 -0.5 13,018 - EX28DRAFT_0071 0.30 +0.9 13,038 + EX28DRAFT_0071 0.31 -1.1 13,039 - EX28DRAFT_0071 0.31 -0.3 13,039 - EX28DRAFT_0071 0.31 +0.3 13,050 - EX28DRAFT_0071 0.32 +0.5 13,057 + EX28DRAFT_0071 0.33 -0.2 13,058 - EX28DRAFT_0071 0.33 -0.3 13,093 + EX28DRAFT_0071 0.35 -1.1 13,093 + EX28DRAFT_0071 0.35 -0.1 13,093 + EX28DRAFT_0071 0.35 -0.1 13,095 + EX28DRAFT_0071 0.35 +0.6 13,096 - EX28DRAFT_0071 0.35 -0.7 13,096 - EX28DRAFT_0071 0.35 +0.2 13,096 - EX28DRAFT_0071 0.35 -0.9 13,133 + EX28DRAFT_0071 0.37 -0.7 13,221 + EX28DRAFT_0071 0.43 +0.4 13,222 - EX28DRAFT_0071 0.43 -0.2 13,512 + EX28DRAFT_0071 0.61 -0.4 13,513 - EX28DRAFT_0071 0.61 -0.9 13,519 - EX28DRAFT_0071 0.61 -0.3
Or see this region's nucleotide sequence