Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0064

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0063 and EX28DRAFT_0064 are separated by 35 nucleotidesEX28DRAFT_0064 and EX28DRAFT_0065 are separated by 69 nucleotidesEX28DRAFT_0065 and EX28DRAFT_0066 are separated by 204 nucleotides EX28DRAFT_0063: EX28DRAFT_0063 - Acyl-CoA synthetase (NDP forming), at 3,648 to 6,311 _0063 EX28DRAFT_0064: EX28DRAFT_0064 - Uncharacterized conserved protein, at 6,347 to 7,045 _0064 EX28DRAFT_0065: EX28DRAFT_0065 - thioredoxin, at 7,115 to 7,534 _0065 EX28DRAFT_0066: EX28DRAFT_0066 - rRNA methylases, at 7,739 to 8,869 _0066 Position (kb) 6 7 8Strain fitness (log2 ratio) -1 0 1at 5.693 kb on - strand, within EX28DRAFT_0063at 6.017 kb on + strand, within EX28DRAFT_0063at 6.018 kb on - strand, within EX28DRAFT_0063at 6.018 kb on - strand, within EX28DRAFT_0063at 6.018 kb on - strand, within EX28DRAFT_0063at 6.069 kb on - strandat 6.083 kb on + strandat 6.158 kb on + strandat 6.159 kb on - strandat 6.160 kb on + strandat 6.160 kb on + strandat 6.160 kb on + strandat 6.161 kb on - strandat 6.191 kb on + strandat 6.349 kb on - strandat 6.386 kb on - strandat 6.409 kb on - strandat 6.706 kb on - strand, within EX28DRAFT_0064at 6.706 kb on - strand, within EX28DRAFT_0064at 6.727 kb on + strand, within EX28DRAFT_0064at 6.728 kb on - strand, within EX28DRAFT_0064at 6.965 kb on - strand, within EX28DRAFT_0064at 7.439 kb on + strand, within EX28DRAFT_0065at 7.502 kb on - strandat 7.523 kb on + strandat 7.523 kb on + strandat 7.524 kb on - strandat 7.524 kb on - strandat 7.524 kb on - strandat 7.529 kb on - strandat 7.534 kb on + strandat 7.535 kb on - strandat 7.539 kb on - strandat 7.590 kb on + strandat 7.590 kb on + strandat 7.590 kb on + strandat 7.591 kb on - strandat 7.595 kb on + strandat 7.596 kb on - strandat 7.599 kb on + strandat 7.599 kb on + strandat 7.600 kb on - strandat 7.600 kb on - strandat 7.627 kb on + strandat 7.637 kb on - strandat 7.652 kb on + strandat 7.653 kb on - strandat 7.653 kb on - strandat 7.676 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.784 kb on + strandat 7.785 kb on - strandat 7.785 kb on - strandat 7.810 kb on + strandat 7.907 kb on - strand, within EX28DRAFT_0066

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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5,693 - EX28DRAFT_0063 0.77 -0.2
6,017 + EX28DRAFT_0063 0.89 -0.2
6,018 - EX28DRAFT_0063 0.89 +0.2
6,018 - EX28DRAFT_0063 0.89 -0.2
6,018 - EX28DRAFT_0063 0.89 +0.1
6,069 - -0.4
6,083 + -0.7
6,158 + -0.0
6,159 - +0.1
6,160 + +1.2
6,160 + +0.5
6,160 + +0.5
6,161 - +0.3
6,191 + +0.1
6,349 - +0.4
6,386 - +0.1
6,409 - +0.2
6,706 - EX28DRAFT_0064 0.51 +0.1
6,706 - EX28DRAFT_0064 0.51 +0.2
6,727 + EX28DRAFT_0064 0.54 +0.0
6,728 - EX28DRAFT_0064 0.55 -0.1
6,965 - EX28DRAFT_0064 0.88 +0.9
7,439 + EX28DRAFT_0065 0.77 +0.2
7,502 - +0.0
7,523 + +0.7
7,523 + +0.9
7,524 - -0.2
7,524 - -0.6
7,524 - -0.4
7,529 - -0.4
7,534 + -0.3
7,535 - +0.6
7,539 - -0.2
7,590 + -0.3
7,590 + +0.2
7,590 + +0.0
7,591 - +1.0
7,595 + +0.3
7,596 - -0.3
7,599 + +0.2
7,599 + +0.6
7,600 - -0.4
7,600 - -0.0
7,627 + -1.4
7,637 - -0.9
7,652 + -0.2
7,653 - +0.9
7,653 - +0.4
7,676 + +0.2
7,784 + +1.2
7,784 + +0.8
7,784 + +0.9
7,784 + +0.4
7,784 + -0.2
7,784 + +1.7
7,784 + +0.3
7,784 + +0.1
7,785 - -0.0
7,785 - +0.3
7,810 + +0.5
7,907 - EX28DRAFT_0066 0.15 +1.0

Or see this region's nucleotide sequence