Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21540

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21530 and CA264_21535 are separated by 239 nucleotidesCA264_21535 and CA264_21540 overlap by 67 nucleotidesCA264_21540 and CA264_21545 are separated by 125 nucleotidesCA264_21545 and CA264_21550 are separated by 219 nucleotides CA264_21530: CA264_21530 - four-helix bundle copper-binding protein, at 176,477 to 176,794 _21530 CA264_21535: CA264_21535 - hypothetical protein, at 177,034 to 177,399 _21535 CA264_21540: CA264_21540 - hypothetical protein, at 177,333 to 177,509 _21540 CA264_21545: CA264_21545 - AraC family transcriptional regulator, at 177,635 to 177,823 _21545 CA264_21550: CA264_21550 - hypothetical protein, at 178,043 to 178,714 _21550 Position (kb) 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 176.457 kb on + strandat 176.469 kb on + strandat 176.469 kb on + strandat 176.472 kb on - strandat 176.603 kb on + strand, within CA264_21530at 176.606 kb on + strand, within CA264_21530at 176.636 kb on + strand, within CA264_21530at 176.636 kb on + strand, within CA264_21530at 176.636 kb on + strand, within CA264_21530at 176.640 kb on + strand, within CA264_21530at 176.641 kb on - strand, within CA264_21530at 176.662 kb on + strand, within CA264_21530at 176.663 kb on - strand, within CA264_21530at 176.742 kb on + strand, within CA264_21530at 176.773 kb on + strandat 176.774 kb on - strandat 176.777 kb on + strandat 176.777 kb on + strandat 176.778 kb on - strandat 176.778 kb on - strandat 176.799 kb on - strandat 176.810 kb on - strandat 176.831 kb on - strandat 176.831 kb on - strandat 176.831 kb on - strandat 176.831 kb on - strandat 176.831 kb on - strandat 176.860 kb on - strandat 176.860 kb on - strandat 176.880 kb on + strandat 176.881 kb on - strandat 176.883 kb on + strandat 176.892 kb on + strandat 176.948 kb on + strandat 176.948 kb on + strandat 176.949 kb on - strandat 176.953 kb on + strandat 176.970 kb on - strandat 177.037 kb on + strandat 177.037 kb on + strandat 177.038 kb on - strandat 177.038 kb on - strandat 177.055 kb on + strandat 177.075 kb on + strand, within CA264_21535at 177.095 kb on + strand, within CA264_21535at 177.099 kb on + strand, within CA264_21535at 177.099 kb on + strand, within CA264_21535at 177.099 kb on + strand, within CA264_21535at 177.142 kb on - strand, within CA264_21535at 177.150 kb on - strand, within CA264_21535at 177.183 kb on + strand, within CA264_21535at 177.212 kb on + strand, within CA264_21535at 177.234 kb on + strand, within CA264_21535at 177.234 kb on + strand, within CA264_21535at 177.235 kb on - strand, within CA264_21535at 177.236 kb on + strand, within CA264_21535at 177.236 kb on + strand, within CA264_21535at 177.236 kb on + strand, within CA264_21535at 177.240 kb on + strand, within CA264_21535at 177.241 kb on - strand, within CA264_21535at 177.363 kb on + strandat 177.364 kb on - strandat 177.364 kb on - strandat 177.419 kb on + strand, within CA264_21540at 177.419 kb on + strand, within CA264_21540at 177.419 kb on + strand, within CA264_21540at 177.420 kb on - strand, within CA264_21540at 177.424 kb on + strand, within CA264_21540at 177.424 kb on + strand, within CA264_21540at 177.425 kb on - strand, within CA264_21540at 177.438 kb on - strand, within CA264_21540at 177.463 kb on + strand, within CA264_21540at 177.463 kb on + strand, within CA264_21540at 177.533 kb on + strandat 177.541 kb on - strandat 177.541 kb on - strandat 177.557 kb on + strandat 177.557 kb on + strandat 177.634 kb on + strandat 177.634 kb on + strandat 177.635 kb on - strandat 177.635 kb on - strandat 177.635 kb on - strandat 177.686 kb on - strand, within CA264_21545at 177.751 kb on + strand, within CA264_21545at 177.773 kb on + strand, within CA264_21545at 177.802 kb on + strand, within CA264_21545at 177.803 kb on - strand, within CA264_21545at 177.805 kb on + strandat 177.819 kb on - strandat 177.846 kb on + strandat 177.846 kb on + strandat 177.847 kb on - strandat 177.847 kb on - strandat 177.848 kb on + strandat 177.848 kb on + strandat 177.849 kb on - strandat 177.849 kb on - strandat 177.895 kb on - strandat 177.899 kb on + strandat 177.899 kb on + strandat 177.928 kb on + strandat 177.928 kb on + strandat 177.979 kb on - strandat 177.979 kb on - strandat 177.983 kb on - strandat 177.987 kb on - strandat 178.024 kb on + strandat 178.025 kb on - strandat 178.038 kb on + strandat 178.384 kb on - strand, within CA264_21550at 178.393 kb on - strand, within CA264_21550at 178.393 kb on - strand, within CA264_21550at 178.395 kb on + strand, within CA264_21550at 178.412 kb on + strand, within CA264_21550at 178.415 kb on + strand, within CA264_21550at 178.415 kb on + strand, within CA264_21550at 178.415 kb on + strand, within CA264_21550at 178.415 kb on + strand, within CA264_21550at 178.415 kb on + strand, within CA264_21550at 178.415 kb on + strand, within CA264_21550at 178.416 kb on - strand, within CA264_21550at 178.416 kb on - strand, within CA264_21550at 178.416 kb on - strand, within CA264_21550at 178.416 kb on - strand, within CA264_21550at 178.473 kb on + strand, within CA264_21550at 178.493 kb on + strand, within CA264_21550

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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176,457 + -1.1
176,469 + +0.3
176,469 + -1.3
176,472 - +0.2
176,603 + CA264_21530 0.40 +1.1
176,606 + CA264_21530 0.41 -0.4
176,636 + CA264_21530 0.50 +0.6
176,636 + CA264_21530 0.50 -0.6
176,636 + CA264_21530 0.50 +0.1
176,640 + CA264_21530 0.51 +2.0
176,641 - CA264_21530 0.52 -0.7
176,662 + CA264_21530 0.58 +0.1
176,663 - CA264_21530 0.58 -0.9
176,742 + CA264_21530 0.83 -1.1
176,773 + -0.6
176,774 - -0.1
176,777 + -0.3
176,777 + -0.1
176,778 - +0.2
176,778 - -1.0
176,799 - -0.4
176,810 - -1.4
176,831 - -0.7
176,831 - -1.6
176,831 - +0.4
176,831 - +0.6
176,831 - +0.4
176,860 - -0.2
176,860 - -0.4
176,880 + +2.0
176,881 - -0.4
176,883 + -0.7
176,892 + +0.3
176,948 + -0.6
176,948 + -0.2
176,949 - -0.8
176,953 + -2.1
176,970 - +0.6
177,037 + -1.8
177,037 + -0.2
177,038 - +0.7
177,038 - -1.0
177,055 + +1.2
177,075 + CA264_21535 0.11 +0.1
177,095 + CA264_21535 0.17 -1.5
177,099 + CA264_21535 0.18 -0.3
177,099 + CA264_21535 0.18 -0.1
177,099 + CA264_21535 0.18 +0.2
177,142 - CA264_21535 0.30 +0.1
177,150 - CA264_21535 0.32 -0.9
177,183 + CA264_21535 0.41 +0.4
177,212 + CA264_21535 0.49 +0.3
177,234 + CA264_21535 0.55 +0.5
177,234 + CA264_21535 0.55 -0.3
177,235 - CA264_21535 0.55 -1.0
177,236 + CA264_21535 0.55 -0.7
177,236 + CA264_21535 0.55 -1.0
177,236 + CA264_21535 0.55 -1.3
177,240 + CA264_21535 0.56 -0.6
177,241 - CA264_21535 0.57 -0.5
177,363 + +0.1
177,364 - -0.5
177,364 - -0.7
177,419 + CA264_21540 0.49 -1.4
177,419 + CA264_21540 0.49 +0.3
177,419 + CA264_21540 0.49 -0.7
177,420 - CA264_21540 0.49 -0.6
177,424 + CA264_21540 0.51 -1.3
177,424 + CA264_21540 0.51 -0.5
177,425 - CA264_21540 0.52 -0.9
177,438 - CA264_21540 0.59 -1.2
177,463 + CA264_21540 0.73 -2.0
177,463 + CA264_21540 0.73 -0.5
177,533 + -0.5
177,541 - -2.8
177,541 - -0.3
177,557 + -2.7
177,557 + -0.6
177,634 + +1.4
177,634 + +0.7
177,635 - -0.3
177,635 - +0.1
177,635 - -0.8
177,686 - CA264_21545 0.27 -2.8
177,751 + CA264_21545 0.61 -1.0
177,773 + CA264_21545 0.73 -0.5
177,802 + CA264_21545 0.88 -1.4
177,803 - CA264_21545 0.89 -0.3
177,805 + -0.4
177,819 - -0.6
177,846 + +0.2
177,846 + -0.1
177,847 - -0.4
177,847 - -0.3
177,848 + +0.6
177,848 + -1.2
177,849 - -0.7
177,849 - -0.2
177,895 - -0.4
177,899 + -1.3
177,899 + -0.3
177,928 + -1.3
177,928 + -0.4
177,979 - -0.0
177,979 - +0.6
177,983 - -0.9
177,987 - -0.9
178,024 + -0.0
178,025 - -0.6
178,038 + -0.6
178,384 - CA264_21550 0.51 +0.8
178,393 - CA264_21550 0.52 +2.0
178,393 - CA264_21550 0.52 +0.1
178,395 + CA264_21550 0.52 -0.8
178,412 + CA264_21550 0.55 -0.6
178,415 + CA264_21550 0.55 -0.6
178,415 + CA264_21550 0.55 +0.2
178,415 + CA264_21550 0.55 -0.3
178,415 + CA264_21550 0.55 -0.5
178,415 + CA264_21550 0.55 -0.4
178,415 + CA264_21550 0.55 +0.6
178,416 - CA264_21550 0.56 -0.2
178,416 - CA264_21550 0.56 -0.4
178,416 - CA264_21550 0.56 -0.3
178,416 - CA264_21550 0.56 -1.1
178,473 + CA264_21550 0.64 -0.3
178,493 + CA264_21550 0.67 +0.1

Or see this region's nucleotide sequence